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[177009_at]

Description Y54G2A.U /REP_DB=WormBase Gene ID /WP=CE25463 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59581.1
Cluster 6grp_high1_10_10 > 08      6grp_total > 29      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 85.1
(3)
P 		72.8
(-1.7)
P 		78.9
(0.6)
A 		69.5
(-3)
A 		16
B 90.1
(3)
P 		56
(-3)
P 		82.2
(1.6)
P 		79.5
(1.1)
A 		34
C 108.3
(3)
P 		39.4
(-3)
A 		63.4
(-0.9)
P 		84.4
(0.9)
M 		69
avr 94.5
(3) 		56.1
(-3) 		74.8
(-0.1) 		77.8
(0.4) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 135.8
(3)
P 		75.1
(-3)
P 		82
(-2.3)
P 		88.4
(-1.7)
M 		103.5
(-0.2)
P 		126.9
(2.1)
P 		61
B 125.6
(3)
P 		118
(1.7)
P 		90.2
(-3)
P 		121.4
(2.3)
P 		92.9
(-2.5)
P 		108.7
(0.1)
P 		35
C 129.3
(2)
P 		123
(1.3)
P 		98.3
(-1.3)
P 		82.1
(-3)
A 		139
(3)
P 		86.4
(-2.5)
P 		57
avr 130.2
(3) 		105.4
(-0.7) 		90.2
(-3) 		97.3
(-1.9) 		111.8
(0.2) 		107.3
(-0.4) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 31
(3)
P 		15.8
(-1.4)
P 		20.6
(0)
A 		10.2
(-3)
A 		21
B 28.7
(3)
P 		13.8
(-3)
P 		19.1
(-0.9)
P 		16.9
(-1.8)
A 		15
C 35.8
(3)
P 		11.3
(-3)
A 		22.1
(-0.4)
P 		14.2
(-2.3)
M 		25
avr 31.8
(3) 		13.6
(-3) 		20.6
(-0.7) 		13.8
(-2.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 25
(0.2)
P 		26.7
(1)
P 		17.9
(-3)
P 		22.4
(-1)
M 		31.2
(3)
P 		30.9
(2.9)
P 		13
B 43.7
(3)
P 		39.3
(1.8)
P 		21.9
(-3)
P 		32.2
(-0.2)
P 		37.7
(1.3)
P 		40.5
(2.1)
P 		22
C 47.9
(3)
P 		37.5
(1)
P 		25
(-1.4)
P 		16.5
(-3)
A 		45
(2.4)
P 		28.9
(-0.6)
P 		31
avr 38.9
(3) 		34.5
(1.5) 		21.6
(-3) 		23.7
(-2.3) 		38
(2.7) 		33.4
(1.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19135
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.U NCBI
Target Description Y54G2A.U /REP_DB=WormBase Gene ID /WP=CE25463 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59581.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067864(11), NM_067863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067864 NCBI Caenorhabditis elegans Y54G2A.17b (Y54G2A.17) mRNA, complete cds. 11/11 A 
NM_067863 NCBI Caenorhabditis elegans Y54G2A.17a (Y54G2A.17) mRNA, complete cds. 11/11 A 
SNAP00000036495 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2859069:2890944:-1 11/11 None
GENEFINDER00000036603 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2879250:2884211:-1 11/11 None
Y54G2A.17a ENSEMBL cdna:known chromosome:CEL140:IV:2872221:2882300:-1 gene:Y54G2A.17 11/11 A 
Y54G2A.17b ENSEMBL cdna:known chromosome:CEL140:IV:2872221:2885253:-1 gene:Y54G2A.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177070 3 2 NM_067863 177009_at (11)
NM_067864 177009_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2879255-2882306(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13742 Hypothetical protein Y54G2A.17b [Caenorhabditis elegans] ref|NP_500265.2| Y54G2A.17b [Caenorhabditis elegans] 0.0
blast AAP13741 Hypothetical protein Y54G2A.17a [Caenorhabditis elegans] ref|NP_500264.3| Y54G2A.17a [Caenorhabditis elegans] 0.0
blast CAE67933 Hypothetical protein CBG13533 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 7.4E-59
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 4.6E-17
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 7.4E-59
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 4.6E-17
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 7.4E-59
Pfam IPR007229 EMBL-EBI Nicotinate phosphoribosyltransferase and related 2.6E-11
Sequence
Target Sequence 
>C. ELEGANS:177009_AT
gctgagctcaaagtccgcttgctcaaccacaaaatcacaaatgaaaaggcggatttattc
caaatttccatggaaaaacgagcgtggcttctcgatcaattctcgtggaaagccgcactt
tcagaagtttccgatggagaattgtcggcttttgtcgcctatgccatcgcttttccagat
acattcctcgctctaatagacacttatgacgtcatccgaagtggagttgtcaatttcgtg
gccgtttcgctggctcttcacgatttgggctatcgatcaatgggatgccgtatcgattcg
ggagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAGCTCAAAGTCCGCTTGCTCA 65 297 664 Antisense
ACGAGCGTGGCTTCTCGATCAATTC 446 93 741 Antisense
GATCAATTCTCGTGGAAAGCCGCAC 87 421 757 Antisense
AAAGCCGCACTTTCAGAAGTTTCCG 149 125 772 Antisense
GAGAATTGTCGGCTTTTGTCGCCTA 650 363 800 Antisense
TGCCATCGCTTTTCCAGATACATTC 140 587 825 Antisense
TACATTCCTCGCTCTAATAGACACT 531 643 843 Antisense
GAGTTGTCAATTTCGTGGCCGTTTC 683 395 887 Antisense
GGCTCTTCACGATTTGGGCTATCGA 110 539 915 Antisense
GGGCTATCGATCAATGGGATGCCGT 84 493 930 Antisense
GGGATGCCGTATCGATTCGGGAGAT 92 495 945 Antisense
Sequence Source Affymetrix Proprietary Database