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[177007_at]

Description Y54G2A.P /REP_DB=WormBase Gene ID /WP=CE25458 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59576.1
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 77.8
(-1.7)
A 		47.2
(-3)
A 		57
(-2.6)
A 		189.5
(3)
A 		142
B 29.9
(-3)
A 		65.3
(-1.5)
A 		105.1
(0.3)
A 		167.6
(3)
A 		138
C 65.5
(-2.5)
A 		94.9
(-2)
A 		35.7
(-3)
A 		400.9
(3)
A 		365
avr 57.7
(-3) 		69.1
(-2.6) 		65.9
(-2.7) 		252.7
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 45.6
(-2.3)
A 		21.5
(-3)
A 		26.8
(-2.9)
A 		95.9
(-0.9)
A 		234.4
(3)
A 		217.2
(2.5)
A 		213
B 99
(-1.6)
A 		35.2
(-3)
A 		180.2
(0.2)
A 		168.8
(-0)
A 		305.5
(3)
A 		247.7
(1.7)
A 		270
C 70
(-2)
A 		62.6
(-2.1)
A 		25.2
(-3)
A 		222.6
(1.6)
A 		25.6
(-3)
A 		282
(3)
A 		257
avr 71.5
(-2.1) 		39.8
(-3) 		77.4
(-1.9) 		162.4
(0.5) 		188.5
(1.3) 		249
(3) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 28.3
(3)
A 		10.3
(-3)
A 		14.9
(-1.5)
A 		27.7
(2.8)
A 		18
B 9.5
(-3)
A 		16.1
(-1.5)
A 		24.3
(0.4)
A 		35.7
(3)
A 		26
C 21.7
(-2)
A 		27.3
(-1.4)
A 		12.4
(-3)
A 		67.6
(3)
A 		55
avr 19.8
(-2.4) 		17.9
(-2.8) 		17.2
(-3) 		43.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 8.4
(-2.8)
A 		7.7
(-2.8)
A 		5.8
(-3)
A 		24.3
(-1.3)
A 		70.7
(3)
A 		52.9
(1.4)
A 		65
B 34.4
(-1.8)
A 		11.7
(-3)
A 		43.7
(-1.3)
A 		44.7
(-1.2)
A 		124.1
(3)
A 		92.4
(1.3)
A 		112
C 25.9
(-1.7)
A 		19.1
(-2.1)
A 		6.4
(-3)
A 		44.8
(-0.4)
A 		8.3
(-2.9)
A 		94.4
(3)
A 		88
avr 22.9
(-2.1) 		12.8
(-3) 		18.6
(-2.5) 		37.9
(-0.8) 		67.7
(1.9) 		79.9
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19383
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.P NCBI
Target Description Y54G2A.P /REP_DB=WormBase Gene ID /WP=CE25458 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59576.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067870
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036505 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2918468:2922226:-1 None
Y54G2A.22 ENSEMBL cdna:known chromosome:CEL140:IV:2919860:2922226:-1 gene:Y54G2A.22 None
NM_067870 NCBI Caenorhabditis elegans Y54G2A.22 (Y54G2A.22) mRNA, complete cds. None
GENEFINDER00000036589 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2921110:2922226:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036583 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2919842-2922232(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.22
Entrez Gene 190283 Entrez gene
SwissProt Q9N3B1 EMBL-EBI
WormBase CE34413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 0.0
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 1.0E-149
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 1.0E-136
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 2.0E-83
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 3.0E-83
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:177007_AT
tcgtgagctcttccatgacatcggagcactacccaactctttgatcgaatttactattga
aggtgttgaagttttcgatttcctcattttgattgacgctttgctccacccagaccgtga
aattgaaacagagcgtatcttcatcactgaagatgccgatttggtcgcgaatttattcaa
agcattcactttactggcagaaggaaacgatcttgcgatgtttcaatatgaattgtgtgg
aatatttggagatgagtgcgatgaattcccacaaattttcattctggatcaacgatacgg
tcactatacggatacgaatatccaagacctcccggacgtttctcataatctcctccgcga
gtcaaaactacattgtgtgccggaatccgaaatggacggaagatcggggccgacctgctg
gcagcgcattagatcgggaaagctcaatggatgtacttcggttccagccgatctctgtgc
tggtttggctacaaaaccgatcgaccttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGAGCTCTTCCATGACATCGGA 681 603 513 Antisense
CACTACCCAACTCTTTGATCGAATT 575 197 539 Antisense
TGCTCCACCCAGACCGTGAAATTGA 74 583 614 Antisense
ATACGAATATCCAAGACCTCCCGGA 335 23 824 Antisense
TCCCGGACGTTTCTCATAATCTCCT 13 597 842 Antisense
ATAATCTCCTCCGCGAGTCAAAACT 111 25 857 Antisense
AACTACATTGTGTGCCGGAATCCGA 468 135 878 Antisense
ACCTGCTGGCAGCGCATTAGATCGG 406 87 925 Antisense
TGGATGTACTTCGGTTCCAGCCGAT 611 549 960 Antisense
GCCGATCTCTGTGCTGGTTTGGCTA 40 285 979 Antisense
TGGCTACAAAACCGATCGACCTTCC 649 543 998 Antisense
Sequence Source Affymetrix Proprietary Database