[Home] | [Total List]

[177006_s_at]

Description Y54G2A.B /REP_DB=WormBase Gene ID /WP=CE25444 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59562.1
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 40      6grp_total > 18      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1369
1 2 3 4 range
A 1204.8
(0.9)
P 		521.7
(-2.9)
P 		508.2
(-3)
P 		1571.5
(3)
P 		1063
B 988.2
(-0.4)
P 		523.6
(-2.4)
P 		396.3
(-3)
P 		1765.7
(3)
P 		1369
C 943.1
(-0.3)
P 		516.8
(-2.7)
P 		457
(-3)
P 		1551.6
(3)
P 		1095
avr 1045.4
(0) 		520.7
(-2.7) 		453.8
(-3) 		1629.6
(3) 		1176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 865
1 2 3 4 5 6 range
A 1089.7
(3)
P 		563.5
(-1.1)
P 		311.1
(-3)
P 		406.4
(-2.3)
P 		425.1
(-2.1)
P 		510.1
(-1.5)
P 		779
B 1176.4
(3)
P 		633.6
(-1)
P 		369.8
(-3)
P 		403.6
(-2.7)
P 		409.8
(-2.7)
P 		494.7
(-2.1)
P 		807
C 974.3
(3)
P 		732.9
(0.5)
P 		517.7
(-1.7)
P 		387.9
(-3)
P 		388.8
(-3)
P 		538.2
(-1.5)
P 		586
avr 1080.1
(3) 		643.3
(-0.8) 		399.5
(-3) 		399.3
(-3) 		407.9
(-2.9) 		514.3
(-2) 		681
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 438.7
(3)
P 		113.2
(-3)
P 		132.9
(-2.6)
P 		230
(-0.8)
P 		326
B 315.1
(1.7)
P 		129.3
(-2.2)
P 		91.8
(-3)
P 		376.3
(3)
P 		285
C 312.2
(3)
P 		148.6
(-3)
P 		159.3
(-2.6)
P 		261.6
(1.1)
P 		164
avr 355.3
(3) 		130.4
(-2.9) 		128
(-3) 		289.3
(1.3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 200.9
(3)
P 		200.4
(3)
P 		67.8
(-3)
P 		103.1
(-1.4)
P 		128.3
(-0.3)
P 		124.2
(-0.5)
P 		133
B 409.3
(3)
P 		210.9
(-0.7)
P 		89.8
(-3)
P 		106.9
(-2.7)
P 		166.5
(-1.6)
P 		184.5
(-1.2)
P 		320
C 361.1
(3)
P 		223.6
(0.1)
P 		131.8
(-1.9)
P 		78
(-3)
P 		125.8
(-2)
P 		180.2
(-0.8)
P 		283
avr 323.8
(3) 		211.6
(0) 		96.5
(-3) 		96
(-3) 		140.2
(-1.8) 		163
(-1.2) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177006_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19376
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.B NCBI
Target Description Y54G2A.B /REP_DB=WormBase Gene ID /WP=CE25444 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59562.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067881 NCBI Caenorhabditis elegans Y54G2A.29 (Y54G2A.29) mRNA, complete cds. 11/11 None
SNAP00000036521 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3009636:3028866:-1 10/11 None
GENEFINDER00000036586 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3023625:3028929:-1 11/11 None
Y54G2A.29 ENSEMBL cdna:known chromosome:CEL140:IV:3023408:3028939:-1 gene:Y54G2A.29 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3023630-3028935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.29
Entrez Gene 177083 Entrez gene
SwissProt Q9N397 EMBL-EBI
WormBase CE34416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59562 Hypothetical protein Y54G2A.29 [Caenorhabditis elegans] ref|NP_500282.2| Y54G2A.29 [Caenorhabditis elegans] 0.0
blast CAE59882 Hypothetical protein CBG03362 [Caenorhabditis briggsae] 0.0
blast AAF59563 Hypothetical protein Y54G2A.28 [Caenorhabditis elegans] ref|NP_500279.3| Y54G2A.28 [Caenorhabditis elegans] 9.0E-30
blast XP_689934 PREDICTED: similar to TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:177006_S_AT
gtgcacgcttgcgatggactcgtacgtatcaatttgtttcggaacggaaaaattctcaag
agaagcgacgcgttttccgggtttagaaggtacataaaacacaaaatacaattcgtagtc
accaacatccgcagcggacatctccgtttccaaatcgtaaacgacgacgaaactccaaaa
actatcagagtctgggcgagcaccgatctcaccacgtcaccatacccaaatcttccagat
gataccagcgtaaagattgtcgggcgctcgtgctcttctgcctcaattcaatggattcgt
gctcacgatagtcatgtaaagtactgtgtttatagaagaagagaacattcaaattttttg
gaacatcttgttagtttggccgacaatctctgcgaaggcggcctctcctcatccgtactc
gtcggctgctacacccattctccgacctcttccgaagacgatgcccaatccctgattgag
acaacaatcggaggtcttcttccagctagtacctaccgtttagacctcctggccactcca
ctagaccgcccgaatgctcaggctttacccttccgaactgtctgggttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCACGCTTGCGATGGACTCGTAC 596 479 1024 Antisense
GGACATCTCCGTTTCCAAATCGTAA 624 525 1159 Antisense
TATCAGAGTCTGGGCGAGCACCGAT 59 659 1206 Antisense
TCACCATACCCAAATCTTCCAGATG 561 623 1240 Antisense
CGTAAAGATTGTCGGGCGCTCGTGC 307 247 1272 Antisense
GGAACATCTTGTTAGTTTGGCCGAC 477 527 1383 Antisense
TGGCCGACAATCTCTGCGAAGGCGG 399 545 1400 Antisense
CTCCGACCTCTTCCGAAGACGATGC 51 235 1463 Antisense
ACAATCGGAGGTCTTCTTCCAGCTA 621 113 1507 Antisense
CAGCTAGTACCTACCGTTTAGACCT 674 197 1526 Antisense
TACCCTTCCGAACTGTCTGGGTTCG 424 647 1589 Antisense
Sequence Source Affymetrix Proprietary Database