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[177004_s_at]

Description Y54G2A.X /REP_DB=WormBase Gene ID /WP=CE25466 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59584.1
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 45      6grp_total > 73      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2095
1 2 3 4 range
A 1966.7
(-0.2)
P 		3047.2
(3)
P 		3033
(3)
P 		1013.8
(-3)
P 		2033
B 2009.7
(0.9)
P 		2501.8
(2.7)
P 		2579.8
(3)
P 		952.4
(-3)
P 		1627
C 1975.7
(0.5)
P 		2396.3
(1.9)
P 		2727.8
(3)
P 		956.9
(-3)
P 		1771
avr 1984
(0.4) 		2648.4
(2.6) 		2780.2
(3) 		974.4
(-3) 		1806

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1789
1 2 3 4 5 6 range
A 1906.4
(-3)
P 		2259.4
(-1)
P 		2925
(2.7)
P 		2974.3
(3)
P 		2495.6
(0.3)
P 		2102.7
(-1.9)
P 		1068
B 1876.3
(-3)
P 		2199.2
(-0.9)
P 		2056.8
(-1.8)
P 		2507.7
(1)
P 		2814.1
(3)
P 		2228.1
(-0.7)
P 		938
C 1949.7
(-3)
P 		2009.8
(-2.8)
P 		3665.6
(3)
P 		2855.7
(0.2)
P 		3119.8
(1.1)
P 		1985.9
(-2.9)
P 		1716
avr 1910.8
(-3) 		2156.1
(-1.5) 		2882.5
(3) 		2779.2
(2.4) 		2809.8
(2.6) 		2105.6
(-1.8) 		972
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 802
1 2 3 4 range
A 716.1
(2.3)
P 		661.5
(1.8)
P 		792.9
(3)
P 		148.4
(-3)
P 		645
B 640.9
(3)
P 		617.9
(2.7)
P 		597.8
(2.4)
P 		203
(-3)
P 		438
C 654
(0.7)
P 		689
(1)
P 		950.7
(3)
P 		161.4
(-3)
P 		789
avr 670.3
(1.9) 		656.1
(1.8) 		780.5
(3) 		170.9
(-3) 		610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 792
1 2 3 4 5 6 range
A 351.4
(-3)
P 		803.5
(3)
P 		637
(0.8)
P 		754.4
(2.3)
P 		753.1
(2.3)
P 		511.9
(-0.9)
P 		452
B 652.9
(-1.6)
P 		732
(-0.8)
P 		499.5
(-3)
P 		664.2
(-1.5)
P 		1143.3
(3)
P 		830.8
(0.1)
P 		644
C 722.7
(-1)
P 		613.2
(-2.5)
P 		933
(1.9)
P 		574.3
(-3)
P 		1009.5
(3)
P 		664.8
(-1.8)
P 		435
avr 575.7
(-3) 		716.2
(-0.9) 		689.8
(-1.3) 		664.3
(-1.6) 		968.6
(3) 		669.2
(-1.6) 		393
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177004_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19367
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.X NCBI
Target Description Y54G2A.X /REP_DB=WormBase Gene ID /WP=CE25466 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59584.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067859(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067859 NCBI Caenorhabditis elegans Y54G2A.14 (Y54G2A.14) mRNA, complete cds. 10/11 None
SNAP00000036488 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2839442:2840682:-1 10/11 None
GENEFINDER00000036577 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2839442:2840682:-1 10/11 None
Y54G2A.14 ENSEMBL cdna:known chromosome:CEL140:IV:2839407:2840748:-1 gene:Y54G2A.14 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2839447-2840754(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.14
Entrez Gene 177065 Entrez gene
SwissProt Q9N3B9 EMBL-EBI
WormBase CE34411 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59584 Hypothetical protein Y54G2A.14 [Caenorhabditis elegans] ref|NP_500260.2| Y54G2A.14 [Caenorhabditis elegans] 1.0E-107
blast AAF59584 Hypothetical protein Y54G2A.14 [Caenorhabditis elegans] ref|NP_500260.2| Y54G2A.14 [Caenorhabditis elegans] 1.0E-94
blast AAF59584 Hypothetical protein Y54G2A.14 [Caenorhabditis elegans] ref|NP_500260.2| Y54G2A.14 [Caenorhabditis elegans] 5.0E-92
blast CAE67935 Hypothetical protein CBG13535 [Caenorhabditis briggsae] 3.0E-47
blast CAE67935 Hypothetical protein CBG13535 [Caenorhabditis briggsae] 1.0E-44
blast AAK68530 Hypothetical protein Y54G2A.6 [Caenorhabditis elegans] ref|NP_500262.1| Y54G2A.6 [Caenorhabditis elegans] 3.0E-43
blast AAK68530 Hypothetical protein Y54G2A.6 [Caenorhabditis elegans] ref|NP_500262.1| Y54G2A.6 [Caenorhabditis elegans] 4.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 8.5E-5
Pfam IPR001304 EMBL-EBI C-type lectin 8.5E-5
Sequence
Target Sequence 
>C. ELEGANS:177004_S_AT
gatgctgtcggatattgccacggaatctcgacaagcctggcggttgttcatactacactt
caggccaactttttggcgtgtgagtttgggggagccgcgacgcatggtttttatatcgaa
accactatccgcacaaaaaccggaaccagcgactccctgttctggatcggtttgagccga
gcttcatccagctccagattcacatgggatgatggatccgtaatgtattggagcaatttt
gacctaaacttcccgaaagacaataatattgtggcggaaagcgttatcaatggaaaatgg
agaactttggctggccagcaaaagctggtgtttgcttgcagctataatccaaataatgtc
aatcccgcttcaactacaccaacttattcaactgacgcctcatcttcaacttacgcacca
tactctacttacgctactgactcttctactgctggttatggctcctcggcaactccttat
tccaccgactctactaccaacacctatggaccaaccgattcctctgcatctccttatcca
accgattcttcgacttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTGTCGGATATTGCCACGGAA 234 413 211 Antisense
TGCCACGGAATCTCGACAAGCCTGG 599 585 226 Antisense
GACAAGCCTGGCGGTTGTTCATACT 64 365 240 Antisense
TTCATACTACACTTCAGGCCAACTT 163 689 257 Antisense
GAGCCGCGACGCATGGTTTTTATAT 252 385 302 Antisense
ACTCCCTGTTCTGGATCGGTTTGAG 641 97 362 Antisense
TCATCCAGCTCCAGATTCACATGGG 171 621 394 Antisense
CAACTTATTCAACTGACGCCTCATC 418 189 590 Antisense
GACTCTTCTACTGCTGGTTATGGCT 694 373 649 Antisense
AACACCTATGGACCAACCGATTCCT 669 135 709 Antisense
TATCCAACCGATTCTTCGACTTCTT 130 653 745 Antisense
Sequence Source Affymetrix Proprietary Database