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[177002_s_at]

Description Y54G2A.M /REP_DB=WormBase Gene ID /WP=CE25455 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59573.1
Cluster 6grp_total > 88      4grp_total > 43      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 8.1
(-3)
A 		67.6
(3)
A 		11.3
(-2.7)
A 		18.6
(-1.9)
A 		60
B 8.1
(-3)
A 		30.3
(3)
A 		12.2
(-1.9)
A 		11.7
(-2)
A 		22
C 8
(-3)
A 		18.9
(3)
A 		10.4
(-1.7)
A 		17.1
(2)
A 		11
avr 8.1
(-3) 		38.9
(3) 		11.3
(-2.4) 		15.8
(-1.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 10.3
(-1.5)
A 		8.4
(-2)
A 		7.5
(-2.2)
A 		4.3
(-3)
A 		11.5
(-1.2)
A 		28.3
(3)
A 		24
B 6.5
(-3)
A 		9.6
(-2.5)
A 		11.3
(-2.2)
A 		9.5
(-2.5)
A 		13.1
(-1.8)
A 		40.9
(3)
A 		34
C 2.8
(-3)
A 		7.8
(-1.9)
A 		10.5
(-1.3)
A 		12.2
(-1)
A 		30.7
(3)
A 		7.2
(-2.1)
A 		28
avr 6.5
(-3) 		8.6
(-2.3) 		9.8
(-2) 		8.7
(-2.3) 		18.4
(0.8) 		25.5
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.9
(-2.9)
A 		14.7
(3)
A 		2.9
(-2.9)
A 		2.7
(-3)
A 		12
B 2.6
(-2.9)
A 		7.5
(3)
A 		2.8
(-2.6)
A 		2.5
(-3)
A 		5
C 2.7
(-3)
A 		5.4
(3)
A 		3.6
(-1)
A 		2.9
(-2.6)
A 		3
avr 2.7
(-3) 		9.2
(3) 		3.1
(-2.6) 		2.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.9
(-2.2)
A 		3
(-1)
A 		1.6
(-2.5)
A 		1.1
(-3)
A 		3.5
(-0.5)
A 		6.9
(3)
A 		6
B 2.3
(-3)
A 		3.2
(-2.6)
A 		2.7
(-2.8)
A 		2.5
(-2.9)
A 		5.3
(-1.6)
A 		15.3
(3)
A 		13
C 1
(-3)
A 		2.4
(-2.1)
A 		2.7
(-1.9)
A 		2.4
(-2.1)
A 		9.9
(3)
A 		2.4
(-2.1)
A 		9
avr 1.7
(-3) 		2.9
(-1.9) 		2.3
(-2.4) 		2
(-2.7) 		6.2
(1.2) 		8.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177002_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19371
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.M NCBI
Target Description Y54G2A.M /REP_DB=WormBase Gene ID /WP=CE25455 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59573.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028323(11), NM_001028324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028323 NCBI Caenorhabditis elegans Y54G2A.24a (Y54G2A.24) mRNA, complete cds. 11/11 None
NM_001028324 NCBI Caenorhabditis elegans Y54G2A.24b (Y54G2A.24) mRNA, complete cds. 11/11 None
SNAP00000036510 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2937987:2939019:-1 11/11 None
GENEFINDER00000036620 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2937987:2939859:-1 11/11 None
Y54G2A.24a ENSEMBL cdna:known chromosome:CEL140:IV:2937902:2939879:-1 gene:Y54G2A.24 11/11 None
Y54G2A.24b ENSEMBL cdna:known chromosome:CEL140:IV:2937987:2939000:-1 gene:Y54G2A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2937992-2939025(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.24
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90052 Hypothetical protein C06A1.3 [Caenorhabditis elegans] ref|NP_496276.1| C06A1.3 [Caenorhabditis elegans] sp|P48458|YT91_CAEEL Putative serine/threonine protein phosphatase C06A1.3 in chromosome II 1.0E-146
blast CAE57467 Hypothetical protein CBG00433 [Caenorhabditis briggsae] 1.0E-145
blast CAE59874 Hypothetical protein CBG03352 [Caenorhabditis briggsae] 1.0E-144
blast AAF59573 Hypothetical protein Y54G2A.24a [Caenorhabditis elegans] ref|NP_001023494.1| Y54G2A.24a [Caenorhabditis elegans] 1.0E-141
blast CAA90052 Hypothetical protein C06A1.3 [Caenorhabditis elegans] ref|NP_496276.1| C06A1.3 [Caenorhabditis elegans] sp|P48458|YT91_CAEEL Putative serine/threonine protein phosphatase C06A1.3 in chromosome II 1.0E-125
blast CAE59874 Hypothetical protein CBG03352 [Caenorhabditis briggsae] 1.0E-125
blast CAE57467 Hypothetical protein CBG00433 [Caenorhabditis briggsae] 1.0E-124
blast CAA90052 Hypothetical protein C06A1.3 [Caenorhabditis elegans] ref|NP_496276.1| C06A1.3 [Caenorhabditis elegans] sp|P48458|YT91_CAEEL Putative serine/threonine protein phosphatase C06A1.3 in chromosome II 1.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.3E-21
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.3E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.8E-34
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.5E-33
Sequence
Target Sequence 
>C. ELEGANS:177002_S_AT
agcggaggctccgatcaaagtcgtcggtgacattcatgcccagtatcaggatttgaaccg
tttgttcgatctgatcggacgggttccagaggagaagctcatgtttttgggcgactatgt
agatcgtggacctcaaggaatcgaagtcctcattctccttttctgcttgaaaatccgtta
ccgtgaccgtatctttttgctccgcggcaatcacgaaactccatcggttaataagattta
cggattctggaatgtcagatcaagtacggtgtcggattgtggcatcagctatatgttcgg
aaaaggtgtggtcgaacaggcatgcaaatcgcttgaaattgacctcatcattcgtgctca
tcaagttgtacaagacggatatgaaatgatgaccggacgccgtttgatcacagttttctc
ggtgcccaactactgtgctcaatttaccaacgcggccgccgttgtttgcctgaatgctaa
cttggagatatccttccaacaaatgcttccacctccacttccagcaactgctaaggctaa
aactgctcctgctatcgcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGAGGCTCCGATCAAAGTCGTC 646 81 87 Antisense
TCGGTGACATTCATGCCCAGTATCA 373 605 110 Antisense
GAAGCTCATGTTTTTGGGCGACTAT 657 341 180 Antisense
AAGGAATCGAAGTCCTCATTCTCCT 384 161 221 Antisense
TTACCGTGACCGTATCTTTTTGCTC 108 683 264 Antisense
TTTTGCTCCGCGGCAATCACGAAAC 139 677 281 Antisense
GAAATTGACCTCATCATTCGTGCTC 140 365 421 Antisense
TGACCGGACGCCGTTTGATCACAGT 552 567 476 Antisense
GCCCAACTACTGTGCTCAATTTACC 543 283 510 Antisense
CGCCGTTGTTTGCCTGAATGCTAAC 390 257 543 Antisense
TAAAACTGCTCCTGCTATCGCAAAC 10 641 624 Antisense
Sequence Source Affymetrix Proprietary Database