[Home] | [Total List]

[177001_at]

Description Y94H6A.A /REP_DB=WormBase Gene ID /WP=CE25628 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60887.1
Cluster 6grp_total > 73      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 76.7
(-3)
P 		76.6
(-3)
A 		100.4
(-0.5)
A 		133.3
(3)
A 		57
B 171
(3)
P 		36.4
(-3)
A 		72.9
(-1.4)
A 		76.5
(-1.2)
P 		135
C 102.9
(-0.4)
A 		23.4
(-3)
A 		92.1
(-0.7)
A 		206.3
(3)
P 		183
avr 116.9
(1.6) 		45.5
(-3) 		88.5
(-0.2) 		138.7
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 30.7
(-2)
A 		16.6
(-3)
A 		103.1
(3)
A 		85.6
(1.8)
M 		93
(2.3)
M 		92.3
(2.3)
P 		87
B 69.7
(-3)
A 		118.3
(3)
A 		99.3
(0.7)
A 		77.6
(-2)
A 		90.7
(-0.4)
M 		75.3
(-2.3)
P 		49
C 105
(-0.2)
P 		104.4
(-0.3)
M 		112.1
(1)
M 		123.8
(3)
P 		99
(-1.2)
P 		88.7
(-3)
P 		35
avr 68.5
(-3) 		79.8
(-1.1) 		104.8
(3) 		95.7
(1.5) 		94.2
(1.2) 		85.4
(-0.2) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 27.9
(3)
P 		16.6
(-3)
A 		26.3
(2.2)
A 		19.5
(-1.5)
A 		11
B 54.5
(3)
P 		9
(-3)
A 		16.9
(-2)
A 		16.3
(-2)
P 		46
C 34.1
(2.9)
A 		6.7
(-3)
A 		32.1
(2.4)
A 		34.8
(3)
P 		28
avr 38.8
(3) 		10.8
(-3) 		25.1
(0.1) 		23.5
(-0.3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.7
(-3)
A 		5.9
(-2.9)
A 		22.5
(1.5)
A 		21.7
(1.3)
M 		28.1
(3)
M 		22.5
(1.5)
P 		22
B 24.3
(-1.8)
A 		39.4
(3)
A 		24.1
(-1.9)
A 		20.6
(-3)
A 		36.9
(2.2)
M 		28.1
(-0.6)
P 		19
C 38.9
(3)
P 		31.9
(0)
M 		28.5
(-1.5)
M 		24.9
(-3)
P 		32
(0)
P 		29.7
(-0.9)
P 		14
avr 23
(-2.6) 		25.7
(-1) 		25
(-1.4) 		22.4
(-3) 		32.3
(3) 		26.8
(-0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19168
Sequence Type Exemplar sequence
Representative Public ID Y94H6A.A NCBI
Target Description Y94H6A.A /REP_DB=WormBase Gene ID /WP=CE25628 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60887.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028419, NM_001028420
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2720562:2726318:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028420 7/11 Cross Hyb Matching Probes None
NM_001028419 7/11 Cross Hyb Matching Probes None
SNAP00000003284 7/11 Cross Hyb Matching Probes None
Y94H6A.9b 7/11 Cross Hyb Matching Probes A 
Y94H6A.9a 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2725266-2726378(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60887 Hypothetical protein Y94H6A.9a [Caenorhabditis elegans] ref|NP_001023590.1| Y94H6A.9a [Caenorhabditis elegans] 1.0E-144
blast AAP31418 Hypothetical protein Y94H6A.9b [Caenorhabditis elegans] ref|NP_001023591.1| Y94H6A.9b [Caenorhabditis elegans] 2.0E-99
blast CAE68240 Hypothetical protein CBG13914 [Caenorhabditis briggsae] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001012 EMBL-EBI UBX domain 3.6E-17
Sequence
Target Sequence 
>C. ELEGANS:177001_AT
tctcaattttccacgcgatgcacgagaagtgcgccaatggaccgactttaaatttttttt
tctcatatattcgcacgtttcgtgacattggaaacaacgacgatggggggccggacagcg
acgattcaggagccgatgccgccgagagaggagccccacaggaattttacgctggaagcg
gacaagcagttcaaggaccacgtggagctgctgctcgaggcccggatagtgaagcccaca
ttcggagaatccttcaggccgccgaagtggttcagccagagggaggagaagctccaagag
gacgcccgtcagggagagaaactattgtaagccgcgagcctaacgcttcacctgtggtcc
gacggcttatcgatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCAATTTTCCACGCGATGCACGA 483 613 50 Antisense
GAAGTGCGCCAATGGACCGACTTTA 475 335 75 Antisense
TTTTCTCATATATTCGCACGTTTCG 254 677 107 Antisense
GCCGGACAGCGACGATTCAGGAGCC 502 283 159 Antisense
GGAGCCCCACAGGAATTTTACGCTG 33 523 199 Antisense
CTGCTCGAGGCCCGGATAGTGAAGC 238 237 260 Antisense
CATTCGGAGAATCCTTCAGGCCGCC 308 217 288 Antisense
TTCAGGCCGCCGAAGTGGTTCAGCC 661 685 302 Antisense
AGGAGAAGCTCCAAGAGGACGCCCG 184 55 333 Antisense
ACTATTGTAAGCCGCGAGCCTAACG 312 101 370 Antisense
TGTGGTCCGACGGCTTATCGATCGA 658 553 402 Antisense
Sequence Source Affymetrix Proprietary Database