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[176999_at]

Description H08J11.A /REP_DB=WormBase Gene ID /WP=CE23798 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35970.1
Cluster 6grp_total > 56      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 14.3
(-3)
A 		32.7
(-1.5)
A 		38.9
(-1)
A 		88.9
(3)
A 		75
B 23.9
(-3)
A 		69.7
(0.8)
A 		96.7
(3)
A 		83.5
(1.9)
A 		73
C 13.9
(-3)
A 		47
(-0.2)
A 		55.8
(0.5)
A 		85.6
(3)
A 		72
avr 17.4
(-3) 		49.8
(-0.2) 		63.8
(1.1) 		86
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 15.5
(-3)
A 		46.4
(0.1)
A 		26.4
(-1.9)
A 		74.6
(3)
A 		15.8
(-3)
A 		74.1
(2.9)
A 		59
B 13.2
(-2.2)
A 		42.9
(1.3)
A 		9.5
(-2.6)
A 		57.3
(3)
A 		8
(-2.8)
A 		6.5
(-3)
A 		51
C 76.9
(3)
A 		38.7
(-0.4)
A 		76.7
(3)
A 		9.1
(-3)
A 		46
(0.3)
A 		49.8
(0.6)
A 		68
avr 35.2
(0) 		42.7
(1.9) 		37.5
(0.6) 		47
(3) 		23.3
(-3) 		43.5
(2.1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.2
(-3)
A 		7.1
(-1.5)
A 		10.2
(0.8)
A 		13
(3)
A 		8
B 7.6
(-3)
A 		17.2
(0.9)
A 		22.4
(3)
A 		17.8
(1.1)
A 		15
C 4.6
(-3)
A 		13.5
(0.6)
A 		19.5
(3)
A 		14.4
(0.9)
A 		15
avr 5.8
(-3) 		12.6
(0.5) 		17.4
(3) 		15.1
(1.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.9
(-3)
A 		16.5
(2.1)
A 		5.7
(-2)
A 		18.9
(3)
A 		4.8
(-2.3)
A 		18
(2.7)
A 		16
B 4.6
(-1.9)
A 		14.3
(2.6)
A 		2.3
(-3)
A 		15.2
(3)
A 		3.3
(-2.5)
A 		2.4
(-3)
A 		13
C 28.5
(3)
A 		11.8
(-0.8)
A 		19.5
(1)
A 		1.8
(-3)
A 		14.9
(-0.1)
A 		16.7
(0.3)
A 		27
avr 12
(1) 		14.2
(3) 		9.2
(-1.6) 		12
(1) 		7.7
(-3) 		12.4
(1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19554
Sequence Type Exemplar sequence
Representative Public ID H08J11.A NCBI
Target Description H08J11.A /REP_DB=WormBase Gene ID /WP=CE23798 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35970.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077133
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077133 NCBI Caenorhabditis elegans H08J11.2 (H08J11.2) mRNA, complete cds. None
H08J11.2 ENSEMBL cdna:known chromosome:CEL140:X:9087558:9097392:1 gene:H08J11.2 None
SNAP00000011952 ENSEMBL cdna:SNAP chromosome:CEL140:X:9092117:9092533:1 None
GENEFINDER00000011957 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9092117:9093067:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9087556-9092532(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H08J11.2
Entrez Gene 3565988 Entrez gene
SwissProt Q689A0 EMBL-EBI
WormBase CE37248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05565 Hypothetical protein H08J11.2 [Caenorhabditis elegans] ref|NP_509534.2| H08J11.2 [Caenorhabditis elegans] 1.0E-158
blast CAE57284 Hypothetical protein CBG00189 [Caenorhabditis briggsae] 9.0E-89
blast AAU05565 Hypothetical protein H08J11.2 [Caenorhabditis elegans] ref|NP_509534.2| H08J11.2 [Caenorhabditis elegans] 3.0E-48
blast AAU05565 Hypothetical protein H08J11.2 [Caenorhabditis elegans] ref|NP_509534.2| H08J11.2 [Caenorhabditis elegans] 1.0E-47
blast CAE57284 Hypothetical protein CBG00189 [Caenorhabditis briggsae] 9.0E-21
blast CAE57284 Hypothetical protein CBG00189 [Caenorhabditis briggsae] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:176999_AT
gcacaagcataggcgtccatcggaacaactcaagtgtgcaggattcttcggaggggtagt
tgctccaaaaattattgtcaaatacacatcgaggcaaggcgagcctatctctcctcctgt
ttactctatatacacacaccctttcgtccctacaccttacaagcttcttccaaagtctca
cttagaaaatatgagcgagacaatcgatgcgaataatgatatccaactactaatagctga
acttgtcgaccaagtcgaactcgagaaaccactcatcgctactattattcagatgagcac
aacgacacctgaaaaaccagaagaaatcattgacgccactggcacaagtgacaccgccga
aaagatcgaagtagtgatctcaaaggaagaaccggcagaacaaaagaatgaagtcgaaga
gcccgattatgctcaagttccagccgaatcagaggatgatgcagctcaagaacttgcacc
aactgacagcgcaatacaagtagttcatgttttagaagcaccacaaaaggcagagttagt
gaccatcccactagcacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAAGCATAGGCGTCCATCGGAA 220 317 492 Antisense
GTGTGCAGGATTCTTCGGAGGGGTA 552 477 525 Antisense
CGAGGCAAGGCGAGCCTATCTCTCC 583 249 581 Antisense
GTTTACTCTATATACACACACCCTT 609 449 610 Antisense
ACAAGCTTCTTCCAAAGTCTCACTT 48 113 650 Antisense
AAACCACTCATCGCTACTATTATTC 373 125 757 Antisense
AGAAATCATTGACGCCACTGGCACA 257 73 813 Antisense
ACTGGCACAAGTGACACCGCCGAAA 160 97 829 Antisense
GCCCGATTATGCTCAAGTTCCAGCC 26 287 912 Antisense
GAACTTGCACCAACTGACAGCGCAA 212 351 961 Antisense
GTTAGTGACCATCCCACTAGCACAT 111 447 1026 Antisense
Sequence Source Affymetrix Proprietary Database