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[176996_at]

Description Y54G2A.W /REP_DB=WormBase Gene ID /WP=CE25465 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59583.1
Cluster 6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 17.4
(-2)
A 		22.1
(-1.4)
A 		9.8
(-3)
A 		56.3
(3)
A 		47
B 9.5
(-2.8)
A 		25.7
(-0.3)
A 		8
(-3)
A 		47.4
(3)
A 		39
C 13.3
(-1.8)
A 		4.6
(-2.8)
A 		2.7
(-3)
A 		55.4
(3)
A 		53
avr 13.4
(-2.1) 		17.5
(-1.6) 		6.8
(-3) 		53
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 2.9
(-2.9)
A 		2.1
(-2.9)
A 		1.1
(-3)
A 		30.7
(-0.5)
A 		73.4
(3)
A 		62.4
(2.1)
A 		72
B 1.4
(-3)
A 		7.2
(-2.5)
A 		42.3
(0.5)
A 		3.1
(-2.9)
A 		61.8
(2.1)
A 		72.3
(3)
M 		71
C 3.8
(-3)
A 		30
(-1.5)
A 		4.4
(-3)
A 		4.7
(-2.9)
A 		74.6
(1.1)
P 		107.3
(3)
P 		104
avr 2.7
(-3) 		13.1
(-2.2) 		15.9
(-2) 		12.8
(-2.2) 		69.9
(2.2) 		80.7
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.3
(1)
A 		4.8
(-0.6)
A 		2.6
(-3)
A 		8.2
(3)
A 		6
B 3
(-2.2)
A 		6.4
(0.3)
A 		1.9
(-3)
A 		10.1
(3)
A 		8
C 4.4
(-0.5)
A 		1.3
(-2.7)
A 		0.9
(-3)
A 		9.3
(3)
A 		8
avr 4.6
(-0.7) 		4.2
(-1.1) 		1.8
(-3) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 0.5
(-2.9)
A 		0.7
(-2.9)
A 		0.2
(-3)
A 		7.8
(-0.9)
A 		22.1
(3)
A 		15.2
(1.1)
A 		22
B 0.5
(-3)
A 		2.4
(-2.6)
A 		10.3
(-0.8)
A 		0.8
(-2.9)
A 		25.1
(2.6)
A 		26.9
(3)
M 		26
C 1.4
(-2.9)
A 		9.2
(-1.6)
A 		1.1
(-3)
A 		0.9
(-3)
A 		24.1
(1)
P 		35.9
(3)
P 		35
avr 0.8
(-3) 		4.1
(-2.2) 		3.9
(-2.3) 		3.2
(-2.4) 		23.8
(2.5) 		26
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19197
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.W NCBI
Target Description Y54G2A.W /REP_DB=WormBase Gene ID /WP=CE25465 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59583.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067860 NCBI Caenorhabditis elegans Y54G2A.15 (Y54G2A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000036625 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2843282:2843956:-1 11/11 None
Y54G2A.15 ENSEMBL cdna:known chromosome:CEL140:IV:2843282:2843956:-1 gene:Y54G2A.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036490 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2843287-2843962(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.15
Entrez Gene 177066 Entrez gene
SwissProt Q9N3B8 EMBL-EBI
WormBase CE25465 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59583 Hypothetical protein Y54G2A.15 [Caenorhabditis elegans] ref|NP_500261.1| Y54G2A.15 [Caenorhabditis elegans] 3.0E-78
blast NP_494203 C33C12.4 [Caenorhabditis elegans] gb|AAB66054.2| Hypothetical protein C33C12.4 [Caenorhabditis elegans] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:176996_AT
ttcactctgctgcttttcatagctcaatgtgcatttggcggaccgacgaaacttactgag
gacgaacagtttgaatttttaaaacgagccaataatttgatgcaaagcaaagctaaactc
gacgcttatacttggatgaatttcgacgccgaactcgaggctgaaatattgaaaatgtcg
tgcgatgaattggaaaaacagcgaggaattcgatttttcgagtcaaagttggttaatcat
gagattacaagtagaacaggagaaactggaattgcgtgcatcaagagtgattgtatgtac
acagatctcataccagctgtgccgatcgctcatatgtgcctttacaatcgcccagtggtc
acaacaaccgtcccaccatcaacgacttctggaactgacaatattgcgagttttttcttt
ggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACTCTGCTGCTTTTCATAGCTC 495 687 31 Antisense
AATGTGCATTTGGCGGACCGACGAA 595 161 56 Antisense
GGCGGACCGACGAAACTTACTGAGG 227 541 67 Antisense
GCTAAACTCGACGCTTATACTTGGA 192 293 142 Antisense
TTTCGACGCCGAACTCGAGGCTGAA 364 669 171 Antisense
GGAGAAACTGGAATTGCGTGCATCA 423 519 289 Antisense
ATGTACACAGATCTCATACCAGCTG 216 47 325 Antisense
GATCGCTCATATGTGCCTTTACAAT 488 417 354 Antisense
TTTACAATCGCCCAGTGGTCACAAC 573 671 371 Antisense
ATCAACGACTTCTGGAACTGACAAT 212 23 408 Antisense
TATTGCGAGTTTTTTCTTTGGAATT 367 663 432 Antisense
Sequence Source Affymetrix Proprietary Database