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[176994_at]

Description Y54G2A.N /REP_DB=WormBase Gene ID /WP=CE25456 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59574.1
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 3.4
(-3)
A 		4.9
(-2.6)
A 		5.3
(-2.5)
A 		28.2
(3)
A 		25
B 1.7
(-3)
A 		5.7
(-2.5)
A 		6.1
(-2.5)
A 		51.8
(3)
A 		50
C 5.1
(-1)
A 		3.2
(-3)
A 		4.5
(-1.7)
A 		9
(3)
A 		6
avr 3.4
(-3) 		4.6
(-2.7) 		5.3
(-2.6) 		29.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 3.1
(-2.6)
A 		5.3
(-1.8)
A 		9.6
(-0.1)
A 		3.7
(-2.4)
A 		17.6
(3)
A 		2.1
(-3)
A 		16
B 3.2
(-3)
A 		5.6
(2)
A 		6.1
(3)
A 		4.8
(0.3)
A 		5.9
(2.6)
A 		4.4
(-0.5)
A 		3
C 3
(-3)
A 		11.6
(-2.2)
A 		5.1
(-2.8)
A 		70.7
(3)
A 		4.9
(-2.8)
A 		3.2
(-3)
A 		68
avr 3.1
(-3) 		7.5
(-1.9) 		6.9
(-2) 		26.4
(3) 		9.5
(-1.4) 		3.2
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.2
(-2.8)
A 		1.1
(-3)
A 		1.4
(-2.4)
A 		4.1
(3)
A 		3
B 0.5
(-3)
A 		1.4
(-2.5)
A 		1.4
(-2.5)
A 		11
(3)
A 		11
C 1.7
(3)
A 		0.9
(-3)
A 		1.6
(2.3)
A 		1.5
(1.5)
A 		1
avr 1.1
(-3) 		1.1
(-3) 		1.5
(-2.5) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		1.9
(-1.3)
A 		2.1
(-1)
A 		1
(-2.4)
A 		5.3
(3)
A 		0.5
(-3)
A 		5
B 1.1
(-3)
A 		1.9
(0.7)
A 		1.5
(-1.2)
A 		1.3
(-2.1)
A 		2.4
(3)
A 		1.7
(-0.2)
A 		1
C 1.1
(-3)
A 		3.5
(-1.9)
A 		1.3
(-2.9)
A 		14.2
(3)
A 		1.6
(-2.8)
A 		1.1
(-3)
A 		13
avr 0.9
(-3) 		2.4
(-1) 		1.6
(-2.1) 		5.5
(3) 		3.1
(-0.1) 		1.1
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19268
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.N NCBI
Target Description Y54G2A.N /REP_DB=WormBase Gene ID /WP=CE25456 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59574.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y54G2A.N
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y54G2A.N Y54G2A.N /REP_DB=WormBase Gene ID /WP=CE25456 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59574.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2933690-2935653(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176994_AT
ccagcggctcgggacagggctggagtccattccaagacgaatgtgtacatggatccttcg
aagagcgattggacaaggccaaggcagaatacgaagcctacgcctgccttatgcctacac
gcctactctgtgcctgcaatcgtgcctacatctacctccaagggaacctggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCGGCTCGGGACAGGGCTGGAG 485 271 32 Antisense
GGGACAGGGCTGGAGTCCATTCCAA 231 495 42 Antisense
GGGCTGGAGTCCATTCCAAGACGAA 640 491 48 Antisense
GAGTCCATTCCAAGACGAATGTGTA 47 399 54 Antisense
GAATGTGTACATGGATCCTTCGAAG 103 333 70 Antisense
GTACATGGATCCTTCGAAGAGCGAT 18 461 76 Antisense
GGATCCTTCGAAGAGCGATTGGACA 620 511 82 Antisense
GAGCGATTGGACAAGGCCAAGGCAG 361 385 94 Antisense
GCAGAATACGAAGCCTACGCCTGCC 594 293 115 Antisense
CCTACATCTACCTCCAAGGGAACCT 67 267 176 Antisense
TCTACCTCCAAGGGAACCTGGAAAT 618 613 182 Antisense
Sequence Source Affymetrix Proprietary Database