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[176988_at]

Description Y105E8B.H /REP_DB=WormBase Gene ID /WP=CE25178 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60851.1
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 30      6grp_total > 99      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 50.4
(-1)
P 		54.4
(-0.5)
P 		79.8
(3)
P 		36
(-3)
A 		44
B 43.8
(-1.8)
P 		40.6
(-3)
A 		49.3
(0.2)
P 		56.7
(3)
P 		16
C 41.5
(-3)
P 		68.8
(0.2)
P 		62.7
(-0.5)
P 		93.3
(3)
P 		52
avr 45.2
(-3) 		54.6
(0) 		63.9
(3) 		62
(2.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 46.2
(-3)
P 		54.2
(-2.6)
P 		49.8
(-2.8)
P 		59.2
(-2.4)
P 		172.2
(3)
P 		110.1
(0)
P 		126
B 77.8
(-1.6)
P 		55
(-2.8)
P 		62.6
(-2.4)
P 		50.5
(-3)
A 		133.4
(1.4)
P 		164.6
(3)
P 		114
C 27.9
(-2.8)
P 		87.7
(0.2)
P 		59.2
(-1.2)
P 		24.8
(-3)
A 		126
(2.2)
P 		141.1
(3)
P 		116
avr 50.6
(-2.6) 		65.6
(-1.7) 		57.2
(-2.2) 		44.8
(-3) 		143.9
(3) 		138.6
(2.7) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.4
(2)
P 		11.8
(-0.5)
P 		20.9
(3)
P 		5.3
(-3)
A 		16
B 14
(3)
P 		10
(-3)
A 		11.4
(-0.9)
P 		12.1
(0.1)
P 		4
C 13.7
(-3)
P 		19.8
(1.5)
P 		21.9
(3)
P 		15.7
(-1.5)
P 		8
avr 15.4
(0.7) 		13.9
(-0.5) 		18.1
(3) 		11
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 8.5
(-3)
P 		19.3
(-1.5)
P 		10.9
(-2.7)
P 		15
(-2.1)
P 		52
(3)
P 		26.8
(-0.5)
P 		44
B 27.1
(-1.3)
P 		18.3
(-2.4)
P 		15.2
(-2.8)
P 		13.4
(-3)
A 		54.2
(2.1)
P 		61.4
(3)
P 		48
C 10.3
(-2.2)
P 		26.8
(0.1)
P 		15.1
(-1.6)
P 		5
(-3)
A 		40.8
(2.1)
P 		47.2
(3)
P 		42
avr 15.3
(-2.3) 		21.5
(-1.4) 		13.7
(-2.6) 		11.1
(-3) 		49
(3) 		45.1
(2.4) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18805
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.H NCBI
Target Description Y105E8B.H /REP_DB=WormBase Gene ID /WP=CE25178 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60851.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170940(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170940 NCBI Caenorhabditis elegans Y105E8A.8 (Y105E8A.8) mRNA, complete cds. 10/11 A 
SNAP00000013328 ENSEMBL cdna:SNAP chromosome:CEL140:I:14409011:14420061:-1 10/11 None
GENEFINDER00000013491 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14409011:14410686:-1 10/11 None
Y105E8A.8 ENSEMBL cdna:known chromosome:CEL140:I:14408875:14413767:-1 gene:Y105E8A.8 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.8
Entrez Gene 173303 Entrez gene
SwissProt Q8WQB4 EMBL-EBI
WormBase CE29846 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21659 Hypothetical protein Y105E8A.8 [Caenorhabditis elegans] ref|NP_740936.1| Y105E8A.8 [Caenorhabditis elegans] 0.0
blast CAE64131 Hypothetical protein CBG08747 [Caenorhabditis briggsae] 1.0E-127
blast CAD21659 Hypothetical protein Y105E8A.8 [Caenorhabditis elegans] ref|NP_740936.1| Y105E8A.8 [Caenorhabditis elegans] 4.0E-98
blast CAE64131 Hypothetical protein CBG08747 [Caenorhabditis briggsae] 2.0E-59
blast NP_659073 hypothetical protein LOC216853 [Mus musculus] gb|AAH69868.1| Wdr79 protein [Mus musculus] gb|AAH21790.1| Hypothetical protein LOC216853 [Mus musculus] emb|CAI52013.1| novel protein [Mus musculus] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:176988_AT
atgcctgacctatttgcagctggtggaagttcatctctagttgcaatttattcattaaaa
tggagaaatgctgtatcgacgattgaaggatcactgaaaggatacacgaatctacatttc
tctcctgatggattaaagctttatgcttcggagagaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTGACCTATTTGCAGCTGGTG 90 41 13 Antisense
GCAGCTGGTGGAAGTTCATCTCTAG 228 315 28 Antisense
GGTGGAAGTTCATCTCTAGTTGCAA 145 499 34 Antisense
GAAGTTCATCTCTAGTTGCAATTTA 81 337 38 Antisense
CATCTCTAGTTGCAATTTATTCATT 224 213 44 Antisense
GGAGAAATGCTGTATCGACGATTGA 341 519 74 Antisense
TTGAAGGATCACTGAAAGGATACAC 195 655 95 Antisense
GATACACGAATCTACATTTCTCTCC 622 423 113 Antisense
AATCTACATTTCTCTCCTGATGGAT 406 169 121 Antisense
TCTCCTGATGGATTAAAGCTTTATG 229 609 133 Antisense
AAGCTTTATGCTTCGGAGAGAAAAA 249 151 148 Antisense
Sequence Source Affymetrix Proprietary Database