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[176984_s_at]

Description F45D11.7 /REP_DB=WormBase Gene ID /WP=CE20799 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF39813.1
Cluster 6grp_total > 18      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 7.8
(-3)
A 		12.4
(-2.3)
A 		13.3
(-2.2)
A 		50.1
(3)
A 		42
B 6.3
(-0.8)
A 		14.5
(3)
A 		1.4
(-3)
A 		2.9
(-2.3)
A 		13
C 4.6
(-2.6)
A 		6.9
(-2.3)
A 		0.8
(-3)
A 		52
(3)
A 		51
avr 6.2
(-2.8) 		11.3
(-1.8) 		5.2
(-3) 		35
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 34.4
(3)
A 		3.7
(-2.5)
A 		0.9
(-3)
A 		1.1
(-3)
A 		2.2
(-2.8)
A 		5.2
(-2.2)
A 		34
B 1.1
(-2.7)
A 		2.1
(-1.1)
A 		3.5
(1.1)
A 		4.7
(3)
A 		0.9
(-3)
A 		2.4
(-0.6)
A 		4
C 3.5
(-1.3)
A 		1.7
(-2.6)
A 		3.1
(-1.6)
A 		5.6
(0.3)
A 		9.4
(3)
A 		1.1
(-3)
A 		8
avr 13
(3) 		2.5
(-3) 		2.5
(-3) 		3.8
(-2.3) 		4.2
(-2) 		2.9
(-2.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.8
(-2.9)
A 		2.7
(-3)
A 		3.5
(-2)
A 		7.3
(3)
A 		5
B 2
(0.1)
A 		3.6
(3)
A 		0.3
(-3)
A 		0.6
(-2.5)
A 		3
C 1.5
(-2.2)
A 		2
(-1.8)
A 		0.3
(-3)
A 		8.8
(3)
A 		9
avr 2.1
(-2) 		2.8
(-1) 		1.4
(-3) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.3
(3)
A 		1.3
(-1.9)
A 		0.2
(-3)
A 		0.3
(-2.9)
A 		0.7
(-2.5)
A 		1.3
(-1.9)
A 		6
B 0.4
(-3)
A 		0.7
(-0.8)
A 		0.9
(0.8)
A 		1.2
(3)
A 		0.4
(-3)
A 		0.9
(0.8)
A 		1
C 1.3
(-0.9)
A 		0.5
(-2.8)
A 		0.8
(-2.1)
A 		1.1
(-1.4)
A 		3
(3)
A 		0.4
(-3)
A 		3
avr 2.7
(3) 		0.8
(-2.4) 		0.6
(-3) 		0.9
(-2.1) 		1.4
(-0.7) 		0.9
(-2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176984_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4241
Sequence Type Exemplar sequence
Representative Public ID F45D11.7 NCBI
Target Description F45D11.7 /REP_DB=WormBase Gene ID /WP=CE20799 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF39813.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F45D11.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F45D11.7 F45D11.7 /REP_DB=WormBase Gene ID /WP=CE20799 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF39813.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:994535-995376(+) 95.91 100.0
chrII:995292-996217(-) 96.81 99.87
Sequence
Target Sequence 
>C. ELEGANS:176984_S_AT
acagcagaccgtttcaacattttcaatttgttctcaattccgacaaatcaaatgtagaaa
tacgcaagtattcaagaaacggatacaaatggacatatttaaatgtaccaggattcgctg
agaaacaatggttcaaacatattactgatgttttctttaggaaccaatgtacgattttga
taatcgaaaattcaccaggtagaagtattgaagaaatatgtgaatgtacaaagaaactga
aaatagtagaattgcgagttgatcactctaaaattcaaaactaccaggttctcgaactgc
tcccgtcactaaaaaagttaaaagttcgtagcctagaaggcccaaatcctaaatccatcc
tcactcagagtttagaaagtatagatattaacagtttgaatgtgacactcgatgatctgc
tagctttaaatcacactgatttcacactacacactcagagttgttccgatagtgatatga
atctcttcctgaaacattggatcaagggatcacactccaatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCAGACCGTTTCAACATTTTCA 385 107 203 Antisense
AACTACCAGGTTCTCGAACTGCTCC 241 129 481 Antisense
GAACTGCTCCCGTCACTAAAAAAGT 283 349 496 Antisense
TAGAAGGCCCAAATCCTAAATCCAT 500 649 536 Antisense
TAAATCCATCCTCACTCAGAGTTTA 341 641 552 Antisense
GTGACACTCGATGATCTGCTAGCTT 44 483 604 Antisense
ATCTGCTAGCTTTAAATCACACTGA 686 29 617 Antisense
CACACTGATTTCACACTACACACTC 556 193 634 Antisense
ACACACTCAGAGTTGTTCCGATAGT 564 109 651 Antisense
GATAGTGATATGAATCTCTTCCTGA 410 425 670 Antisense
GATCAAGGGATCACACTCCAATCTC 144 423 702 Antisense
Sequence Source Affymetrix Proprietary Database