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[176982_at]

Description Y54G2A.G /REP_DB=WormBase Gene ID /WP=CE25449 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59567.1
Cluster 6grp_total > 16      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 333.2
(3)
P 		273
(1.3)
P 		116.6
(-3)
A 		245.5
(0.6)
P 		217
B 264.3
(2.5)
P 		280.7
(3)
P 		82.9
(-3)
A 		205.9
(0.7)
P 		198
C 321.5
(3)
P 		266.8
(1)
P 		157.9
(-3)
A 		254.2
(0.5)
P 		164
avr 306.3
(3) 		273.5
(1.9) 		119.1
(-3) 		235.2
(0.7) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 129.7
(-1.1)
A 		336.1
(3)
P 		44.5
(-2.7)
A 		162.5
(-0.4)
A 		31.3
(-3)
A 		216.2
(0.6)
P 		305
B 172.8
(3)
P 		119.3
(0.3)
A 		75.7
(-1.8)
A 		71.2
(-2.1)
A 		76
(-1.8)
A 		52.2
(-3)
A 		121
C 342.8
(3)
P 		67.1
(-2.5)
A 		189.2
(-0.1)
P 		41.2
(-3)
A 		166.9
(-0.5)
P 		68.3
(-2.5)
A 		302
avr 215.1
(3) 		174.2
(1) 		103.1
(-2.4) 		91.6
(-3) 		91.4
(-3) 		112.2
(-2) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 121.3
(3)
P 		59.3
(-1.1)
P 		30.5
(-3)
A 		35.9
(-2.6)
P 		91
B 84.3
(3)
P 		69.3
(1.6)
P 		19.2
(-3)
A 		43.9
(-0.7)
P 		65
C 106.4
(3)
P 		76.7
(0.2)
P 		55
(-1.9)
A 		42.9
(-3)
P 		64
avr 104
(3) 		68.4
(-0.1) 		34.9
(-3) 		40.9
(-2.5) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 23.9
(-2.2)
A 		119.5
(3)
P 		9.7
(-3)
A 		41.2
(-1.3)
A 		9.4
(-3)
A 		52.6
(-0.6)
P 		110
B 60.1
(3)
P 		39.7
(0.1)
A 		18.4
(-3)
A 		18.8
(-2.9)
A 		30.9
(-1.2)
A 		19.5
(-2.8)
A 		42
C 127.1
(3)
P 		20.5
(-2.4)
A 		48.2
(-1)
P 		8.3
(-3)
A 		54
(-0.7)
P 		22.9
(-2.3)
A 		119
avr 70.4
(3) 		59.9
(1.7) 		25.4
(-2.7) 		22.8
(-3) 		31.4
(-1.9) 		31.7
(-1.9) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19178
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.G NCBI
Target Description Y54G2A.G /REP_DB=WormBase Gene ID /WP=CE25449 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59567.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028328(11), NM_001028329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028328 NCBI Caenorhabditis elegans Y54G2A.26a (Y54G2A.26) mRNA, complete cds. 11/11 None
NM_001028329 NCBI Caenorhabditis elegans Y54G2A.26b (Y54G2A.26) mRNA, complete cds. 11/11 None
SNAP00000036517 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2991689:2992465:-1 11/11 None
GENEFINDER00000036613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2986606:3011196:-1 11/11 None
Y54G2A.26a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2986094:2995570:-1 gene:Y54G2A.26 11/11 None
Y54G2A.26a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2986095:2995571:-1 gene:Y54G2A.26 11/11 None
Y54G2A.26b ENSEMBL cdna:known chromosome:CEL140:IV:2986716:2992508:-1 gene:Y54G2A.26 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2991812-2992491(-) 93.57 93.57
Public Domain and Genome References
Ensembl Y54G2A.26
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59568 Hypothetical protein Y54G2A.26a [Caenorhabditis elegans] ref|NP_001023499.1| Y54G2A.26a [Caenorhabditis elegans] 0.0
blast AAP13744 Hypothetical protein Y54G2A.26b [Caenorhabditis elegans] ref|NP_001023500.1| Y54G2A.26b [Caenorhabditis elegans] 0.0
blast CAE59877 Hypothetical protein CBG03357 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000036517 1 187-209
Sequence
Target Sequence 
>C. ELEGANS:176982_AT
tatcaacaacgtggaccttctctctacgccccaccaggcccaccggtaatgcaccagaat
ggaccaccgggagttgttcctacatcgaatccctattaccaacctcctgttccaccacaa
catcatcatatgcaaccacaggcgcctatgatgtcccccggaatgcatggacaacagcaa
caacaaccatattataatacgcaatcaccattgacaggaactccaccatccatgagctac
ggtaccccacagatccctgctccaccaccaacctcgaatggttcggcgccaatgttcaat
ttttcgaagccaagaaactcgaacgagggatcgttgacgaatggtggtggcggtgctgca
catcgccgaaagaagcacaacgatttgagctcgccacgctatagcagtaatagcaatgaa
gatgttgatggttcagtgtttcccgatatggcagacttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAACAACGTGGACCTTCTCTCT 113 659 88 Antisense
AATGCACCAGAATGGACCACCGGGA 236 149 135 Antisense
TGTTCCTACATCGAATCCCTATTAC 8 563 162 Antisense
TGCAACCACAGGCGCCTATGATGTC 524 575 218 Antisense
TATGATGTCCCCCGGAATGCATGGA 547 655 234 Antisense
CACCATTGACAGGAACTCCACCATC 455 201 293 Antisense
TCCACCATCCATGAGCTACGGTACC 566 589 309 Antisense
CACCAACCTCGAATGGTTCGGCGCC 677 201 353 Antisense
AAGCACAACGATTTGAGCTCGCCAC 68 151 460 Antisense
AGCTCGCCACGCTATAGCAGTAATA 629 79 475 Antisense
GTGTTTCCCGATATGGCAGACTTCC 34 487 523 Antisense
Sequence Source Affymetrix Proprietary Database