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[176979_at]

Description Y48G1C.E /REP_DB=WormBase Gene ID /WP=CE25321 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60700.1
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_high_8_8 > 17      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 30      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 243.5
(3)
P 		163.7
(-3)
P 		166.3
(-2.8)
P 		228
(1.8)
A 		80
B 271.8
(3)
P 		191.2
(-0)
P 		113.1
(-3)
P 		186.2
(-0.2)
P 		159
C 191.2
(3)
P 		142.3
(-2.4)
P 		136.8
(-3)
P 		183
(2.1)
P 		54
avr 235.5
(3) 		165.7
(-1.3) 		138.7
(-3) 		199.1
(0.7) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 239.1
(-2)
P 		251.1
(-1.7)
P 		193
(-3)
P 		361
(0.6)
P 		251.2
(-1.7)
P 		471.8
(3)
P 		279
B 295
(1.6)
P 		252.9
(-0)
P 		175.4
(-3)
P 		218.1
(-1.4)
P 		239.9
(-0.5)
P 		330.8
(3)
P 		155
C 192.9
(-3)
P 		257.3
(-0.5)
P 		217.3
(-2.1)
P 		231.9
(-1.5)
P 		270
(-0)
P 		349.3
(3)
P 		156
avr 242.3
(-1.5) 		253.8
(-1.1) 		195.2
(-3) 		270.3
(-0.6) 		253.7
(-1.1) 		384
(3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 88.7
(3)
P 		35.5
(-2.8)
P 		43.5
(-1.9)
P 		33.4
(-3)
A 		55
B 86.7
(3)
P 		47.2
(-0.9)
P 		26.2
(-3)
P 		39.7
(-1.7)
P 		61
C 63.3
(3)
P 		40.9
(-1.1)
P 		47.7
(0.1)
P 		30.9
(-3)
P 		32
avr 79.6
(3) 		41.2
(-2.1) 		39.1
(-2.4) 		34.7
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 44.1
(-2.8)
P 		89.3
(0.9)
P 		42
(-3)
P 		91.6
(1.1)
P 		75.8
(-0.2)
P 		114.9
(3)
P 		73
B 102.6
(1.5)
P 		84.2
(0.1)
P 		42.6
(-3)
P 		57.8
(-1.9)
P 		97.5
(1.1)
P 		123.4
(3)
P 		81
C 71.5
(-0.9)
P 		78.5
(-0.3)
P 		55.3
(-2.3)
P 		46.6
(-3)
P 		87.4
(0.5)
P 		116.9
(3)
P 		70
avr 72.7
(-0.8) 		84
(0.1) 		46.6
(-3) 		65.3
(-1.4) 		86.9
(0.4) 		118.4
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18858
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.E NCBI
Target Description Y48G1C.E /REP_DB=WormBase Gene ID /WP=CE25321 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60700.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058265 NCBI Caenorhabditis elegans Y48G1C.4 (Y48G1C.4) mRNA, complete cds. 11/11 None
SNAP00000011473 ENSEMBL cdna:SNAP chromosome:CEL140:I:49921:54360:1 11/11 None
GENEFINDER00000011494 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:53063:54360:1 11/11 None
Y48G1C.4 ENSEMBL cdna:known chromosome:CEL140:I:49919:54360:1 gene:Y48G1C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:53062-54360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.4
Entrez Gene 171594 Entrez gene
SwissProt Q9BL79 EMBL-EBI
WormBase CE30021 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599435_AT similar to phosphatidylglycerophosphate synthase cfa
CANINE:1598161_AT similar to phosphatidylglycerophosphate synthase cfa
CANINE_2:CFA.17714.1.S1_S_AT similar to phosphatidylglycerophosphate synthase cfa
CANINE_2:CFA.7788.1.A1_S_AT similar to phosphatidylglycerophosphate synthase cfa
CANINE_2:CFA.8680.1.A1_AT similar to phosphatidylglycerophosphate synthase cfa
CANINE_2:CFAAFFX.8916.1.S1_AT similar to phosphatidylglycerophosphate synthase cfa
DROSOPHILA_2:1636502_AT dm
DROSGENOME1:150162_AT dm
CHICKEN:GGAAFFX.4487.1.S1_S_AT similar to silencer-associated factor gga
CHICKEN:GGAAFFX.4487.3.S1_S_AT similar to silencer-associated factor gga
HG-U133_PLUS_2:219394_AT phosphatidylglycerophosphate synthase hs
HG-FOCUS:219394_AT phosphatidylglycerophosphate synthase hs
HG-U133A:219394_AT phosphatidylglycerophosphate synthase hs
HG-U133A_2:219394_AT phosphatidylglycerophosphate synthase hs
HU35KSUBB:RC_R46209_AT phosphatidylglycerophosphate synthase hs
U133_X3P:G13259369_3P_AT phosphatidylglycerophosphate synthase hs
U133_X3P:HS.162604.0.A1_3P_AT phosphatidylglycerophosphate synthase hs
HG-U133_PLUS_2:226266_AT phosphatidylglycerophosphate synthase hs
HG-U133B:226266_AT phosphatidylglycerophosphate synthase hs
HG-U95B:50976_AT phosphatidylglycerophosphate synthase hs
HG-U95E:91139_AT phosphatidylglycerophosphate synthase hs
HG-U95D:74347_AT Dynein, axonemal, heavy polypeptide 17 hs
HG-U133_PLUS_2:227851_S_AT Dynein, axonemal, heavy polypeptide 17 hs
HG-U133B:227851_S_AT Dynein, axonemal, heavy polypeptide 17 hs
HG-U133_PLUS_2:227906_S_AT Dynein, axonemal, heavy polypeptide 17 hs
HG-U133B:227906_S_AT Dynein, axonemal, heavy polypeptide 17 hs
HG-U95B:54646_AT Dynein, axonemal, heavy polypeptide 17 hs
HU35KSUBA:AA426178_AT Dynein, axonemal, heavy polypeptide 17 hs
HU35KSUBC:RC_AA458936_AT Dynein, axonemal, heavy polypeptide 17 hs
U133_X3P:HS.162604.1.A1_3P_AT Dynein, axonemal, heavy polypeptide 17 hs
U133_X3P:HS.162604.1.S1_3P_A_AT Dynein, axonemal, heavy polypeptide 17 hs
RG-U34C:RC_AI171990_AT similar to phosphatidylglycerophosphate synthase (predicted) rn
RAE230A:1371863_AT similar to phosphatidylglycerophosphate synthase (predicted) rn
RAT230_2:1371863_AT similar to phosphatidylglycerophosphate synthase (predicted) rn
YEAST_2:1779004_AT Phosphatidylglycerolphosphate synthase, catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490666 Y48G1C.4 [Caenorhabditis elegans] gb|AAK29892.2| Hypothetical protein Y48G1C.4 [Caenorhabditis elegans] 0.0
blast NP_490666 Y48G1C.4 [Caenorhabditis elegans] gb|AAK29892.2| Hypothetical protein Y48G1C.4 [Caenorhabditis elegans] 1.0E-151
blast CAE60321 Hypothetical protein CBG03912 [Caenorhabditis briggsae] 1.0E-115
blast CAE60321 Hypothetical protein CBG03912 [Caenorhabditis briggsae] 1.0E-104
blast CAE60321 Hypothetical protein CBG03912 [Caenorhabditis briggsae] 8.0E-84
blast CAG32754 hypothetical protein [Gallus gallus] ref|NP_001008463.1| similar to silencer-associated factor [Gallus gallus] 4.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 8.9E-6
Sequence
Target Sequence 
>C. ELEGANS:176979_AT
ggggcttttgggaattcatcaggagtttgaatttttgcaaaaacttttctcactgaaaaa
tccggagctcaaaatgacgatggcttcgggatatttcaattttattcgagattatgagga
atcgattctgaaagaaggagattatcatttggatattcttacagcttctccttttgcgaa
cggattcttcgaatcaaatggcttctcgaaatatattccaccactatattccaacatttc
tgatcaatttcttcgaaaacgagaaatcaacggccgattgaatgtaaaaatgttcgaata
tcgaagagaagaatggacatttcatgcaaaaggtctttgggcagaacataataatcaatt
aatgacattaattggctcatcaaattacggttatcgatcggttcatcgagatcttgaagc
tcaagtgatggttgttacaagaaatccgacacttatcgatcgattgaaagatgagaaaaa
tctattattcgaatattcatcgatacttgacatggctgcacttcaacaaccggaacatca
tattccaccattagttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGCTTTTGGGAATTCATCAGGAG 146 495 378 Antisense
ACGATGGCTTCGGGATATTTCAATT 90 93 454 Antisense
TGGATATTCTTACAGCTTCTCCTTT 374 551 527 Antisense
GCTTCTCCTTTTGCGAACGGATTCT 482 305 541 Antisense
TTCTCGAAATATATTCCACCACTAT 493 693 580 Antisense
CAACATTTCTGATCAATTTCTTCGA 519 187 609 Antisense
AATTACGGTTATCGATCGGTTCATC 409 169 760 Antisense
GAAATCCGACACTTATCGATCGATT 118 363 818 Antisense
TCGATACTTGACATGGCTGCACTTC 300 601 877 Antisense
TGCACTTCAACAACCGGAACATCAT 594 575 894 Antisense
ACATCATATTCCACCATTAGTTCGA 171 107 912 Antisense
Sequence Source Affymetrix Proprietary Database