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[176978_at]

Description Y48G9A.I /REP_DB=WormBase Gene ID /WP=CE22767 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60715.1
Cluster 6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 22.2
(-2.6)
A 		55.3
(-1.7)
A 		6.4
(-3)
A 		230.4
(3)
P 		224
B 23.9
(-2.6)
A 		35
(-2.3)
A 		5.7
(-3)
A 		275.3
(3)
P 		270
C 35
(-3)
A 		54.5
(-2.6)
A 		45.4
(-2.8)
A 		315.8
(3)
P 		281
avr 27
(-2.8) 		48.3
(-2.3) 		19.2
(-3) 		273.8
(3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 26.8
(-3)
A 		28
(-3)
A 		27.9
(-3)
A 		77.9
(-1.3)
A 		92.9
(-0.8)
A 		209.9
(3)
P 		183
B 34.5
(-3)
A 		49
(-2.6)
A 		44.4
(-2.7)
A 		81.5
(-1.6)
A 		199
(2)
M 		232.9
(3)
P 		198
C 47.3
(-2.8)
A 		37.7
(-3)
A 		49.3
(-2.7)
A 		50.2
(-2.7)
A 		98.5
(-1.5)
P 		280.5
(3)
P 		243
avr 36.2
(-3) 		38.2
(-2.9) 		40.5
(-2.9) 		69.9
(-2) 		130.1
(-0.3) 		241.1
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 8.1
(-1.8)
A 		12
(-1.1)
A 		1.7
(-3)
A 		33.7
(3)
P 		32
B 7.6
(-2.3)
A 		8.6
(-2.2)
A 		1.3
(-3)
A 		58.7
(3)
P 		57
C 11.6
(-3)
A 		15.7
(-2.4)
A 		15.8
(-2.4)
A 		53.3
(3)
P 		42
avr 9.1
(-2.6) 		12.1
(-2.2) 		6.3
(-3) 		48.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 4.9
(-3)
A 		9.9
(-2.4)
A 		6.1
(-2.8)
A 		19.8
(-1.1)
A 		28
(0)
A 		51.1
(3)
P 		46
B 12
(-2.9)
A 		16.3
(-2.6)
A 		10.8
(-3)
A 		21.6
(-2.1)
A 		80.9
(2.5)
M 		86.8
(3)
P 		76
C 17.5
(-2.5)
A 		11.5
(-2.9)
A 		12.6
(-2.8)
A 		10.1
(-3)
A 		31.9
(-1.4)
P 		93.9
(3)
P 		84
avr 11.5
(-2.8) 		12.6
(-2.8) 		9.8
(-3) 		17.2
(-2.3) 		46.9
(0.3) 		77.3
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19046
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.I NCBI
Target Description Y48G9A.I /REP_DB=WormBase Gene ID /WP=CE22767 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60715.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065100 NCBI Caenorhabditis elegans Y48G9A.7 (Y48G9A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000015844 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2109181:2112353:1 11/11 None
Y48G9A.7 ENSEMBL cdna:known chromosome:CEL140:III:2111801:2112388:1 gene:Y48G9A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2111800-2112388(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G9A.7
Entrez Gene 190054 Entrez gene
SwissProt Q9N3M9 EMBL-EBI
WormBase CE22767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29915 Hypothetical protein Y48G9A.7 [Caenorhabditis elegans] ref|NP_497501.1| Y48G9A.7 [Caenorhabditis elegans] 9.0E-37
blast AAK29915 Hypothetical protein Y48G9A.7 [Caenorhabditis elegans] ref|NP_497501.1| Y48G9A.7 [Caenorhabditis elegans] 2.0E-30
blast AAB52278 Hypothetical protein R08E5.4 [Caenorhabditis elegans] ref|NP_504043.1| R08E5.4 [Caenorhabditis elegans] 5.0E-10
blast AAB52278 Hypothetical protein R08E5.4 [Caenorhabditis elegans] ref|NP_504043.1| R08E5.4 [Caenorhabditis elegans] 1.0E-8
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015844 2 20-37,47-69
Sequence
Target Sequence 
>C. ELEGANS:176978_AT
caagaccatccaacttttcgggaatattacgggcggcccaatcgaattacactcacaaac
gggatcccgtcgacgtcgtgacactgtagaaaatgccggaaaatctgcttgggacactgc
cggagatgtgggtaaatctgttattgataccgttgaaaacgccggagcagctgtcaagaa
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGACCATCCAACTTTTCGGGAAT 161 185 21 Antisense
TCGGGAATATTACGGGCGGCCCAAT 444 599 38 Antisense
GGCCCAATCGAATTACACTCACAAA 375 543 55 Antisense
AATTACACTCACAAACGGGATCCCG 75 177 65 Antisense
CAAACGGGATCCCGTCGACGTCGTG 36 189 76 Antisense
CCGTCGACGTCGTGACACTGTAGAA 245 265 87 Antisense
GGAAAATCTGCTTGGGACACTGCCG 618 527 118 Antisense
GGGACACTGCCGGAGATGTGGGTAA 21 495 131 Antisense
GTAAATCTGTTATTGATACCGTTGA 612 461 152 Antisense
GATACCGTTGAAAACGCCGGAGCAG 293 423 166 Antisense
AACGCCGGAGCAGCTGTCAAGAATG 687 145 178 Antisense
Sequence Source Affymetrix Proprietary Database