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[176977_at]

Description Y48G1C.F /REP_DB=WormBase Gene ID /WP=CE22171 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60701.1
Cluster 6grp_total > 39      4grp_total > 15      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 70
(3)
P 		6.7
(-3)
A 		41.2
(0.3)
A 		16.1
(-2.1)
A 		63
B 62.6
(3)
A 		24.4
(-3)
A 		28.6
(-2.3)
A 		55.4
(1.9)
A 		38
C 60.6
(0.4)
A 		25.9
(-3)
A 		36.6
(-2)
A 		87.2
(3)
A 		61
avr 64.4
(3) 		19
(-3) 		35.5
(-0.8) 		52.9
(1.5) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 46.8
(0.4)
A 		19.1
(-3)
A 		24.8
(-2.3)
A 		22.7
(-2.6)
A 		68.4
(3)
A 		28.2
(-1.9)
A 		49
B 38.9
(0.6)
A 		23.6
(-2)
A 		17.3
(-3)
A 		23.3
(-2)
A 		42.8
(1.3)
A 		53.3
(3)
A 		36
C 62.5
(2.1)
A 		56.2
(1.4)
A 		17.3
(-3)
A 		25.2
(-2.1)
A 		61.6
(2)
A 		70.2
(3)
A 		53
avr 49.4
(1.7) 		33
(-0.9) 		19.8
(-3) 		23.7
(-2.4) 		57.6
(3) 		50.6
(1.9) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.5
(3)
P 		1.5
(-3)
A 		10.8
(-0.7)
A 		2.4
(-2.8)
A 		24
B 20
(3)
A 		6
(-3)
A 		6.6
(-2.7)
A 		11.8
(-0.5)
A 		14
C 20
(3)
A 		7.4
(-3)
A 		12.7
(-0.5)
A 		14.7
(0.5)
A 		13
avr 21.8
(3) 		5
(-3) 		10
(-1.2) 		9.6
(-1.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.6
(-1.7)
A 		6.8
(-2.5)
A 		5.4
(-3)
A 		5.8
(-2.8)
A 		20.7
(3)
A 		6.9
(-2.4)
A 		15
B 13.6
(0.6)
A 		7.8
(-1.6)
A 		4.2
(-3)
A 		6.2
(-2.2)
A 		17.4
(2)
A 		19.9
(3)
A 		16
C 23.2
(2.9)
A 		17.2
(1)
A 		4.4
(-3)
A 		5.1
(-2.8)
A 		19.9
(1.9)
A 		23.5
(3)
A 		19
avr 15.1
(1.3) 		10.6
(-0.6) 		4.7
(-3) 		5.7
(-2.6) 		19.3
(3) 		16.8
(2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18868
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.F NCBI
Target Description Y48G1C.F /REP_DB=WormBase Gene ID /WP=CE22171 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60701.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058270, NM_182095
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000011480 ENSEMBL cdna:SNAP chromosome:CEL140:I:86784:92648:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182095 8/11 Cross Hyb Matching Probes None
GENEFINDER00000011498 8/11 Cross Hyb Matching Probes None
GENEFINDER00000011495 3/11 Cross Hyb Matching Probes None
Y48G1C.11 8/11 Cross Hyb Matching Probes None
Y48G1C.9 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:69958-92556(+) 99.86 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_871895 Y48G1C.11 [Caenorhabditis elegans] gb|AAN60505.1| Hypothetical protein Y48G1C.11 [Caenorhabditis elegans] 0.0
blast CAE60319 Hypothetical protein CBG03910 [Caenorhabditis briggsae] 1.0E-116
blast NP_490671 Y48G1C.9 [Caenorhabditis elegans] gb|AAK29897.2| Hypothetical protein Y48G1C.9 [Caenorhabditis elegans] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001163 EMBL-EBI Small nuclear ribonucleoprotein (Sm protein) 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:176977_AT
tgatccggccggatgatttcgacgcaatgtccatgaattcatccatcaactcatattcgt
tcgttaatacgccagttcgtaacaacacgacaacagaatcaatattcgatcattcgacac
ttgagaaacgaaatcgtcgagcagctgccacaattggctccgaatcgccagttattcaaa
tgagaccaaaagagcaaattgtcggatattcgaaatatgcatttgatgattcattatcac
caagaccacattcccgaactgttgagacgcctattttaaagaatacccccccccccccct
ctaaaatgaaaagaacaagacgattgacagctagcatgtgcgacgatcaaagtaccgatt
tgattcagttgaagggacacgagaacgcgaaaaagtcggaagcccatctgaaagtgctgg
aatacattggcaaacgctatgaaattcgaatgaccgacgggcggtacatacgtggcacga
tgatcgccactgacaaggacgctaatatggttttcaacaaggtttccaacgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCCGGCCGGATGATTTCGACGC 613 565 4496 Antisense
GACGCAATGTCCATGAATTCATCCA 688 379 4516 Antisense
TCCATCAACTCATATTCGTTCGTTA 134 591 4537 Antisense
TTCGTTCGTTAATACGCCAGTTCGT 619 687 4551 Antisense
AAATCGTCGAGCAGCTGCCACAATT 100 119 4626 Antisense
GGCTCCGAATCGCCAGTTATTCAAA 299 539 4651 Antisense
TCATTATCACCAAGACCACATTCCC 567 619 4726 Antisense
ACATTCCCGAACTGTTGAGACGCCT 48 103 4743 Antisense
GACGATTGACAGCTAGCATGTGCGA 155 379 4814 Antisense
GCATGTGCGACGATCAAAGTACCGA 327 309 4829 Antisense
GTTTTCAACAAGGTTTCCAACGCTG 298 447 5005 Antisense
Sequence Source Affymetrix Proprietary Database