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[176975_s_at]

Description Y48G1C.B /REP_DB=WormBase Gene ID /WP=CE22174 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60697.1
Cluster 6grp_total > 69      4grp_total > 38      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 82.9
(3)
A 		22.1
(-2.2)
A 		22.9
(-2.2)
A 		13.1
(-3)
A 		70
B 92.1
(3)
A 		39.6
(-1.2)
A 		16.2
(-3)
A 		40.2
(-1.1)
A 		76
C 139.2
(3)
A 		62.1
(-1)
A 		24.2
(-3)
A 		79.7
(-0.1)
A 		115
avr 104.7
(3) 		41.3
(-1.6) 		21.1
(-3) 		44.3
(-1.3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 6.4
(-2.9)
A 		89.5
(2.7)
A 		4.5
(-3)
A 		8.5
(-2.7)
A 		6.4
(-2.9)
A 		93.8
(3)
A 		89
B 10.5
(-2.8)
A 		7.3
(-3)
A 		12.3
(-2.6)
A 		13.8
(-2.5)
A 		9.1
(-2.9)
A 		90.8
(3)
A 		84
C 120
(3)
A 		8.3
(-2.9)
A 		25.8
(-2)
A 		6
(-3)
A 		86.2
(1.2)
A 		19.6
(-2.3)
A 		114
avr 45.6
(0.7) 		35
(-0.4) 		14.2
(-2.5) 		9.4
(-3) 		33.9
(-0.5) 		68.1
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 30.2
(3)
A 		4.8
(-2.4)
A 		6
(-2.1)
A 		1.9
(-3)
A 		28
B 29.4
(3)
A 		9.8
(-1.6)
A 		3.8
(-3)
A 		8.6
(-1.9)
A 		26
C 46.1
(3)
A 		17.8
(-1.5)
A 		8.4
(-3)
A 		13.4
(-2.2)
A 		38
avr 35.2
(3) 		10.8
(-2) 		6.1
(-3) 		8
(-2.6) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 1.2
(-3)
A 		31.8
(3)
A 		1
(-3)
A 		2.1
(-2.8)
A 		1.9
(-2.8)
A 		22.8
(1.2)
A 		31
B 3.6
(-2.8)
A 		2.4
(-3)
A 		3
(-2.9)
A 		3.7
(-2.8)
A 		3.7
(-2.8)
A 		33.9
(3)
A 		32
C 44.5
(3)
A 		2.5
(-2.8)
A 		6.6
(-2.3)
A 		1.2
(-3)
A 		27.9
(0.7)
A 		6.6
(-2.3)
A 		43
avr 16.4
(1.5) 		12.2
(0.2) 		3.5
(-2.6) 		2.3
(-3) 		11.2
(-0.2) 		21.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176975_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18834
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.B NCBI
Target Description Y48G1C.B /REP_DB=WormBase Gene ID /WP=CE22174 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60697.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058272 NCBI Caenorhabditis elegans Y48G1C.7 (Y48G1C.7) mRNA, complete cds. 11/11 None
Y48G1C.7 ENSEMBL cdna:known chromosome:CEL140:I:96212:100613:-1 gene:Y48G1C.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:96825-100613(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.7
Entrez Gene 171600 Entrez gene
SwissProt Q9BL75 EMBL-EBI
WormBase CE27266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490673 Y48G1C.7 [Caenorhabditis elegans] gb|AAK29896.1| Hypothetical protein Y48G1C.7 [Caenorhabditis elegans] 0.0
blast CAE60312 Hypothetical protein CBG03903 [Caenorhabditis briggsae] 0.0
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:176975_S_AT
tcatcatcccagcaacagattcagctgccgtatagaaaggcgaaatatcaggagcctaaa
aattttgggcagcagagtagtggcttgcctctatcacaatctggaatggcgcgtggaaca
agtcgaaacgaggctctcttccgtattgccaagaactcatttggctcagcaaccgacaac
gagacattcgatttgctcttcaaaatgctcttcgaaaaaagcgaacatcgtctcttgcaa
atagtgaatcacacgtttggagtcgaaataatggctggagaagaaatggataatggagaa
atgcatttgcatatggctcctgatggagcaattgttgaggaaattgtcgaggaagaagtt
attgggacagttggtgatgatgttaatttggaagaagaagtgcacgagaatgagcctaaa
gtttatactggggagaagcagattaatgatgtcctcgaacaagtggttgtggaagagcca
aatcatcacgacgatcatcctccgcatgagctgctcgaagaagatgctctcgtgaaccca
gatgatgtgatagtcgaccccaatcagctgatcattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCATCCCAGCAACAGATTCAGC 510 619 1255 Antisense
GAGTAGTGGCTTGCCTCTATCACAA 158 399 1329 Antisense
AAGTCGAAACGAGGCTCTCTTCCGT 404 157 1374 Antisense
GCTCTCTTCCGTATTGCCAAGAACT 298 299 1387 Antisense
CATTTGGCTCAGCAACCGACAACGA 151 213 1412 Antisense
ACGAGACATTCGATTTGCTCTTCAA 470 93 1433 Antisense
AGCGAACATCGTCTCTTGCAAATAG 447 81 1474 Antisense
GCATTTGCATATGGCTCCTGATGGA 169 309 1557 Antisense
CAAATCATCACGACGATCATCCTCC 663 193 1733 Antisense
ATCCTCCGCATGAGCTGCTCGAAGA 487 39 1751 Antisense
TCGACCCCAATCAGCTGATCATTCA 162 603 1808 Antisense
Sequence Source Affymetrix Proprietary Database