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[176974_at]

Description Y48G1C.A /REP_DB=WormBase Gene ID /WP=CE25319 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60696.1
Cluster 6grp_total > 67      4grp_total > 39      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 111.8
(3)
A 		13.2
(-2.5)
A 		4.9
(-3)
A 		11.8
(-2.6)
A 		107
B 115.9
(3)
A 		5.8
(-2.9)
A 		4.8
(-3)
A 		24.2
(-2)
A 		111
C 150.4
(3)
A 		7
(-3)
A 		8.4
(-2.9)
A 		45.2
(-1.4)
A 		143
avr 126
(3) 		8.7
(-2.9) 		6
(-3) 		27.1
(-1.9) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 9.8
(-2.5)
A 		7.7
(-2.7)
A 		6.3
(-2.8)
A 		3.7
(-3)
A 		5.9
(-2.8)
A 		76.9
(3)
A 		73
B 12.7
(-2.1)
A 		4.3
(-3)
A 		6.8
(-2.7)
A 		7.1
(-2.7)
A 		9
(-2.5)
A 		60.7
(3)
A 		56
C 4.7
(-2.8)
A 		4.2
(-3)
A 		5.7
(-2.5)
A 		4.3
(-3)
A 		5.8
(-2.5)
A 		23
(3)
A 		19
avr 9.1
(-2.5) 		5.4
(-3) 		6.3
(-2.8) 		5
(-3) 		6.9
(-2.8) 		53.5
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 40.7
(3)
A 		2.9
(-2.8)
A 		1.3
(-3)
A 		1.7
(-2.9)
A 		39
B 36.9
(3)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		5.1
(-2.3)
A 		36
C 49.8
(3)
A 		2
(-3)
A 		2.9
(-2.9)
A 		7.6
(-2.3)
A 		48
avr 42.5
(3) 		2.1
(-3) 		1.8
(-3) 		4.8
(-2.6) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.8
(-2.7)
A 		2.7
(-2.4)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		1.8
(-2.7)
A 		18.7
(3)
A 		18
B 4.4
(-2.2)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		1.9
(-2.9)
A 		3.7
(-2.3)
A 		22.6
(3)
A 		21
C 1.7
(-2.3)
A 		1.3
(-2.6)
A 		1.4
(-2.6)
A 		0.9
(-3)
A 		1.9
(-2.1)
A 		7.7
(3)
A 		7
avr 2.6
(-2.4) 		1.8
(-2.8) 		1.5
(-2.9) 		1.2
(-3) 		2.5
(-2.5) 		16.3
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18836
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.A NCBI
Target Description Y48G1C.A /REP_DB=WormBase Gene ID /WP=CE25319 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60696.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058273 NCBI Caenorhabditis elegans Y48G1C.8 (Y48G1C.8) mRNA, complete cds. 11/11 None
Y48G1C.8 ENSEMBL cdna:known chromosome:CEL140:I:101415:107759:-1 gene:Y48G1C.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:101414-107759(-) 99.52 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.8
Entrez Gene 3564797 Entrez gene
SwissProt Q9N3N9 EMBL-EBI
WormBase CE36240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490674 Y48G1C.8 [Caenorhabditis elegans] gb|AAK29890.2| Hypothetical protein Y48G1C.8 [Caenorhabditis elegans] 0.0
blast CAE60312 Hypothetical protein CBG03903 [Caenorhabditis briggsae] 0.0
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:176974_AT
cagcttcaacacgatcagcaccagcagcagcaacatcagctaatgcaagatgtttcgatt
gctcaagacgctcagggacatctgctagacgatgatttgttggatatgtctcaagaggat
gtgctcaacaatggctacgatttggagtttgacgatgatccgcttactcagcaggagaac
ccggcgccctattttgagaatccccggcaattggaaacgggacatatctacttgactgtt
cgacataagagggtcgccagcacgtttgaggccgtgttggagtggattgctaataccaat
gttgtcgaagaacgtggtctgctgaactacgcgaagccgggacacccaccaattgttcgt
aattctcgtgcgtacgcattcttcgtcgccgggacagccatctttccacacgacatcaat
cgtgacgacttctcgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTTCAACACGATCAGCACCAGC 32 205 2098 Antisense
TCGATTGCTCAAGACGCTCAGGGAC 24 605 2152 Antisense
GACGCTCAGGGACATCTGCTAGACG 347 381 2164 Antisense
GATGATCCGCTTACTCAGCAGGAGA 252 411 2251 Antisense
GCGCCCTATTTTGAGAATCCCCGGC 63 261 2281 Antisense
GGACATATCTACTTGACTGTTCGAC 430 525 2317 Antisense
ATAAGAGGGTCGCCAGCACGTTTGA 623 1 2342 Antisense
GAACGTGGTCTGCTGAACTACGCGA 260 347 2407 Antisense
ATTCTCGTGCGTACGCATTCTTCGT 290 9 2459 Antisense
CCATCTTTCCACACGACATCAATCG 222 271 2495 Antisense
ATCAATCGTGACGACTTCTCGCCAT 283 27 2512 Antisense
Sequence Source Affymetrix Proprietary Database