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[176973_s_at]

Description M7.9 /REP_DB=WormBase Gene ID /WP=CE12220 /TR=O17974 /GB=CAA92752.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.7
(-3)
A 		4.5
(0.5)
A 		6.5
(3)
A 		3.2
(-1.1)
A 		5
B 2.4
(-3)
A 		2.3
(-3)
A 		2.2
(-3)
A 		28.2
(3)
A 		26
C 2.7
(-2.3)
A 		3.1
(-2)
A 		1.9
(-3)
A 		9.1
(3)
A 		7
avr 2.3
(-3) 		3.3
(-2.5) 		3.5
(-2.4) 		13.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.6
(-1)
A 		1.8
(-2.6)
A 		1.9
(-2.4)
A 		2.5
(-1.2)
A 		4.6
(3)
A 		1.6
(-3)
A 		3
B 1.7
(-2.5)
A 		3.4
(0.4)
A 		2.3
(-1.5)
A 		1.4
(-3)
A 		4.9
(3)
A 		1.6
(-2.7)
A 		4
C 2.5
(-0.8)
A 		4.8
(2.8)
A 		3
(-0)
A 		2.3
(-1.1)
A 		4.9
(3)
A 		1.1
(-3)
A 		4
avr 2.3
(-1.4) 		3.3
(0.4) 		2.4
(-1.2) 		2.1
(-1.8) 		4.8
(3) 		1.4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-2.5)
A 		1
(-0.5)
A 		1.7
(3)
A 		0.5
(-3)
A 		1
B 0.8
(-2.7)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		6
(3)
A 		6
C 0.9
(-1.5)
A 		0.9
(-1.5)
A 		0.7
(-3)
A 		1.5
(3)
A 		1
avr 0.8
(-3) 		0.8
(-3) 		1
(-2.4) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-2.4)
A 		0.6
(-1.8)
A 		0.4
(-3)
A 		0.6
(-1.8)
A 		1.4
(3)
A 		0.4
(-3)
A 		1
B 0.6
(-2.3)
A 		1.1
(-0.4)
A 		0.6
(-2.3)
A 		0.4
(-3)
A 		2
(3)
A 		0.6
(-2.3)
A 		2
C 0.9
(-0.5)
A 		1.5
(2.5)
A 		0.8
(-1)
A 		0.5
(-2.5)
A 		1.6
(3)
A 		0.4
(-3)
A 		1
avr 0.7
(-2) 		1.1
(0) 		0.6
(-2.5) 		0.5
(-3) 		1.7
(3) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176973_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9253
Sequence Type Exemplar sequence
Representative Public ID M7.9 NCBI
Target Description M7.9 /REP_DB=WormBase Gene ID /WP=CE12220 /TR=O17974 /GB=CAA92752.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069671 NCBI Caenorhabditis elegans M7.9 (M7.9) mRNA, complete cds. 11/11 None
SNAP00000010388 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11100673:11101450:-1 11/11 None
GENEFINDER00000010399 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11100673:11101450:-1 11/11 None
M7.9 ENSEMBL cdna:known chromosome:CEL140:IV:11100667:11101450:-1 gene:M7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11100678-11101456(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M7.9
Entrez Gene 178009 Entrez gene
SwissProt O17974 EMBL-EBI
WormBase CE12220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92752 Hypothetical protein M7.9 [Caenorhabditis elegans] ref|NP_502072.1| M7.9 [Caenorhabditis elegans] 1.0E-83
blast CAE61999 Hypothetical protein CBG06007 [Caenorhabditis briggsae] 4.0E-53
blast CAE62001 Hypothetical protein CBG06009 [Caenorhabditis briggsae] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 2.1E-51
Sequence
Target Sequence 
>C. ELEGANS:176973_S_AT
ttcttcgttggtactgtcccaaaatgactcgaagaagggtggattgccaaagaaagttca
tttctcattcgggcctgcatacttgagaaatttgacaaaagaagagaaacaacaatatta
tgcaatcttcggaaataaggatttgacaatcaagcaacaggaagatcagagacttgcttt
tgctgagaaacacggattcggacaagctatcaaagacgatatcaaactgaaagctggcaa
tcacgaactcatccgaaaggaacgacctgaaatcatcaagaatcttttggctgctcacga
ggcaaccatgaagattttcgataataaggatcagacattgagccaacgggaagctgcagt
taatgctttgaagaagaaatatccacatgcaccatcaaccctttactacatttctcgatt
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCGTTGGTACTGTCCCAAAAT 148 689 57 Antisense
AGAAAGTTCATTTCTCATTCGGGCC 597 71 107 Antisense
TCATTCGGGCCTGCATACTTGAGAA 428 619 121 Antisense
GGAAGATCAGAGACTTGCTTTTGCT 463 531 216 Antisense
GAAAGCTGGCAATCACGAACTCATC 529 359 285 Antisense
GAACTCATCCGAAAGGAACGACCTG 218 349 301 Antisense
AAGAATCTTTTGGCTGCTCACGAGG 433 151 334 Antisense
GCTGCTCACGAGGCAACCATGAAGA 258 297 346 Antisense
AAGGATCAGACATTGAGCCAACGGG 644 159 382 Antisense
GAGCCAACGGGAAGCTGCAGTTAAT 628 381 396 Antisense
AACCCTTTACTACATTTCTCGATTG 254 123 453 Antisense
Sequence Source Affymetrix Proprietary Database