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[176972_at]

Description Y105E8B.O /REP_DB=WormBase Gene ID /WP=CE25171 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60858.1
Cluster 6grp_total > 88      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 17.4
(-1.7)
A 		6.3
(-3)
A 		57.6
(3)
A 		7
(-2.9)
A 		51
B 49.2
(0.4)
A 		25.9
(-3)
A 		45.5
(-0.2)
A 		67.5
(3)
A 		42
C 51.8
(2)
A 		53.6
(2.5)
A 		34.8
(-3)
A 		55.3
(3)
A 		21
avr 39.5
(0.8) 		28.6
(-3) 		46
(3) 		43.3
(2.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 61.4
(-1.7)
A 		16.8
(-3)
A 		55.2
(-1.8)
A 		38.9
(-2.3)
A 		113.3
(-0.1)
A 		215.9
(3)
P 		199
B 51.5
(-2.2)
A 		33.7
(-3)
A 		36.6
(-2.9)
A 		66.2
(-1.5)
A 		134.4
(1.6)
A 		164.7
(3)
P 		131
C 17.1
(-3)
A 		50.4
(-2.1)
A 		29.4
(-2.7)
A 		58.3
(-1.8)
A 		114.7
(-0.2)
A 		228.7
(3)
P 		212
avr 43.3
(-2.7) 		33.6
(-3) 		40.4
(-2.8) 		54.5
(-2.3) 		120.8
(0.1) 		203.1
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.3
(-0.7)
A 		1.4
(-2.8)
A 		15.1
(3)
A 		1
(-3)
A 		14
B 15.7
(3)
A 		6.4
(-3)
A 		10.5
(-0.4)
A 		14.4
(2.2)
A 		9
C 17.1
(3)
A 		15.4
(1.7)
A 		12.1
(-0.8)
A 		9.3
(-3)
A 		8
avr 13
(3) 		7.7
(-3) 		12.6
(2.5) 		8.2
(-2.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 11.3
(-2.3)
A 		6
(-3)
A 		12
(-2.2)
A 		9.9
(-2.5)
A 		34.2
(0.6)
A 		52.6
(3)
P 		47
B 17.9
(-2)
A 		11.2
(-2.7)
A 		8.9
(-3)
A 		17.5
(-2)
A 		54.6
(2.2)
A 		61.4
(3)
P 		53
C 6.3
(-3)
A 		15.4
(-2.2)
A 		7.5
(-2.9)
A 		11.7
(-2.5)
A 		37.1
(-0.4)
A 		76.6
(3)
P 		70
avr 11.8
(-2.7) 		10.9
(-2.8) 		9.5
(-3) 		13
(-2.6) 		42
(0.6) 		63.5
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18792
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.O NCBI
Target Description Y105E8B.O /REP_DB=WormBase Gene ID /WP=CE25171 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60858.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026516
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y105E8A.27 ENSEMBL cdna:known chromosome:CEL140:I:14449677:14452393:1 gene:Y105E8A.27 None
SNAP00000013335 ENSEMBL cdna:SNAP chromosome:CEL140:I:14452090:14458831:1 None
NM_001026516 NCBI Caenorhabditis elegans Y105E8A.27 (Y105E8A.27) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013333 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14449607-14452324(+) 78.3 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.27
Entrez Gene 3565398 Entrez gene
SwissProt Q7YTU3 EMBL-EBI
WormBase CE34222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92402 Hypothetical protein Y105E8A.27 [Caenorhabditis elegans] ref|NP_001021687.1| Y105E8A.27 [Caenorhabditis elegans] 1.0E-140
blast CAE56496 Hypothetical protein CBG24213 [Caenorhabditis briggsae] 3.0E-64
blast CAD92402 Hypothetical protein Y105E8A.27 [Caenorhabditis elegans] ref|NP_001021687.1| Y105E8A.27 [Caenorhabditis elegans] 7.0E-35
blast CAE56496 Hypothetical protein CBG24213 [Caenorhabditis briggsae] 4.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021687.1 3 136-155,162-184,222-241
Y105E8A.27 3 136-155,162-184,222-241
SNAP00000013335 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:176972_AT
gtgcatcaactatgagccacacgatttgtggacttttatggaccagtgtcaggaatcgat
tcaggccattgctcaggtttccgggctgacgcaaattgccgatacgccgggaattttcaa
ttccttcaatttaccggtttaccgatttgccggtttgccggaatttcgcaaatcaggcaa
tctgccgatttgcaggaaatttcaattccggcagtttgtcggtttgccgaatttccagaa
atttcaccatccaccacatccttcaagacgcggagcccaagttttcccatatcatcagcc
ccctccgattgacattgattcttatggtcacctctctgctgattgctattctggatttga
gctcgagaatgttcttggtcagggtctcagtgtaccccctgattctagacgtgtctggca
gcagaattggctagaatctggtcagactatcaccgagattccagtttacccggaggaatg
gctctgttttgagatttatgcatttctgcttctcctgcttccgattttggattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATCAACTATGAGCCACACGAT 326 477 96 Antisense
CGATTCAGGCCATTGCTCAGGTTTC 622 247 152 Antisense
GGTTTCCGGGCTGACGCAAATTGCC 678 443 171 Antisense
TTTCCAGAAATTTCACCATCCACCA 104 669 327 Antisense
CACCACATCCTTCAAGACGCGGAGC 235 203 347 Antisense
CCCCTCCGATTGACATTGATTCTTA 320 261 395 Antisense
ATTGATTCTTATGGTCACCTCTCTG 454 5 409 Antisense
CCTCTCTGCTGATTGCTATTCTGGA 38 269 426 Antisense
TTGGTCAGGGTCTCAGTGTACCCCC 503 595 470 Antisense
TATCACCGAGATTCCAGTTTACCCG 280 659 543 Antisense
TTCTCCTGCTTCCGATTTTGGATTG 313 693 605 Antisense
Sequence Source Affymetrix Proprietary Database