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[176971_at]

Description Y67D8C.L /REP_DB=WormBase Gene ID /WP=CE22775 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23380.1
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 19.9
(-1.1)
A 		7.6
(-3)
A 		46.8
(3)
A 		46.3
(2.9)
A 		39
B 16.9
(3)
A 		13.6
(0.5)
A 		11.4
(-1.2)
A 		9.1
(-3)
A 		8
C 8.9
(-3)
A 		11.5
(-2.8)
A 		12.1
(-2.7)
A 		74
(3)
A 		65
avr 15.2
(-2.2) 		10.9
(-3) 		23.4
(-0.7) 		43.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7
(-2.4)
A 		19
(3)
A 		10.8
(-0.7)
A 		5.6
(-3)
A 		11.9
(-0.2)
A 		8.9
(-1.5)
A 		13
B 6.4
(-2.7)
A 		30.2
(3)
A 		5.5
(-2.9)
A 		10.1
(-1.8)
A 		5.2
(-3)
A 		8.8
(-2.1)
A 		25
C 5.7
(-2.9)
A 		27.7
(0.7)
A 		14.2
(-1.5)
A 		4.9
(-3)
A 		41.5
(3)
A 		16.1
(-1.2)
A 		37
avr 6.4
(-3) 		25.6
(3) 		10.2
(-1.8) 		6.9
(-2.8) 		19.5
(1.1) 		11.3
(-1.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.2
(0.1)
A 		1.7
(-3)
A 		12.2
(3)
A 		6.8
(-0.1)
A 		11
B 5.4
(3)
A 		3.4
(-0.4)
A 		2.6
(-1.8)
A 		1.9
(-3)
A 		4
C 3
(-3)
A 		3.3
(-2.8)
A 		4.2
(-2.2)
A 		12.5
(3)
A 		10
avr 5.2
(0.3) 		2.8
(-3) 		6.3
(1.9) 		7.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-3)
A 		6.8
(3)
A 		2.4
(-1.8)
A 		1.4
(-2.9)
A 		3.6
(-0.5)
A 		2.2
(-2)
A 		6
B 2.2
(-2.4)
A 		10
(3)
A 		1.3
(-3)
A 		2.7
(-2)
A 		2.1
(-2.4)
A 		3.3
(-1.6)
A 		9
C 2.1
(-2.5)
A 		8.4
(0.6)
A 		3.6
(-1.7)
A 		1
(-3)
A 		13.4
(3)
A 		5.4
(-0.9)
A 		12
avr 1.9
(-2.8) 		8.4
(3) 		2.4
(-2.4) 		1.7
(-3) 		6.4
(1.2) 		3.6
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19340
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.L NCBI
Target Description Y67D8C.L /REP_DB=WormBase Gene ID /WP=CE22775 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23380.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y67D8C.L
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y67D8C.L Y67D8C.L /REP_DB=WormBase Gene ID /WP=CE22775 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23380.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067886 11/11 Negative Strand Matching Probes A 
SNAP00000001611 11/11 Negative Strand Matching Probes None
GENEFINDER00000001626 11/11 Negative Strand Matching Probes None
Y67D8C.6 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3062963-3063323(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176971_AT
cgttggatccgtgatgctctgaattgtggcgttcacgatggaaaagcggcgatcggaacc
ttccatcgtcgaggagatgggtcgcttggtgctgggctcgccgtctggaagatcctcggc
ggatcgcttcaacgacatgctcgccgacggcccagcagcttcctcactcgtcgactctgg
caccggatcatcgagttcttcgacagcatcgggcgccatcaccaccatcacatcctcctc
gtcaacgcgcgccatcacctcaacttcttcatcgtcttccaggaatatggagccgccgga
gtagtcggacaagtagccggacgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGGATCCGTGATGCTCTGAATT 623 243 16 Antisense
GATGCTCTGAATTGTGGCGTTCACG 434 413 28 Antisense
TGGAAAAGCGGCGATCGGAACCTTC 523 545 54 Antisense
GGAACCTTCCATCGTCGAGGAGATG 105 529 70 Antisense
CGAGGAGATGGGTCGCTTGGTGCTG 373 249 85 Antisense
TGGAAGATCCTCGGCGGATCGCTTC 431 547 121 Antisense
ACTCTGGCACCGGATCATCGAGTTC 438 97 189 Antisense
GATCATCGAGTTCTTCGACAGCATC 374 421 201 Antisense
GTCTTCCAGGAATATGGAGCCGCCG 538 449 289 Antisense
TGGAGCCGCCGGAGTAGTCGGACAA 371 545 303 Antisense
AGTCGGACAAGTAGCCGGACGTCGA 596 59 318 Antisense
Sequence Source Affymetrix Proprietary Database