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[176968_s_at]

Description Y105E8B.E /REP_DB=WormBase Gene ID /WP=CE23209 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60848.1
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 42      6grp_total > 32      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1087
1 2 3 4 range
A 684.2
(0.1)
P 		1210.2
(3)
P 		939.7
(1.5)
P 		124.1
(-3)
P 		1086
B 803.6
(0.9)
P 		1129.8
(3)
P 		1132.3
(3)
P 		173.6
(-3)
P 		959
C 838.9
(2.2)
P 		878.9
(2.5)
P 		948.4
(3)
P 		123.6
(-3)
P 		825
avr 775.6
(1.1) 		1073
(3) 		1006.8
(2.6) 		140.4
(-3) 		933

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 905
1 2 3 4 5 6 range
A 1125.9
(3)
P 		1012
(2.1)
P 		806.4
(0.6)
P 		835.5
(0.8)
P 		766.8
(0.3)
P 		329.2
(-3)
P 		797
B 919.8
(1.8)
P 		836.7
(1.2)
P 		1089.2
(3)
P 		588.2
(-0.6)
P 		750.1
(0.6)
P 		243.3
(-3)
P 		846
C 995.8
(2)
P 		798.3
(0.6)
P 		1148.1
(3)
P 		570.5
(-1)
P 		878.6
(1.1)
P 		276.4
(-3)
P 		872
avr 1013.8
(3) 		882.3
(1.9) 		1014.6
(3) 		664.7
(0.1) 		798.5
(1.2) 		283
(-3) 		732
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 249.1
(2.7)
P 		262.7
(3)
P 		245.7
(2.6)
P 		18.2
(-3)
P 		245
B 256.2
(2.4)
P 		279
(3)
P 		262.4
(2.6)
P 		37
(-3)
P 		242
C 277.7
(2)
P 		252.7
(1.5)
P 		330.6
(3)
P 		20.8
(-3)
P 		310
avr 261
(2.6) 		264.8
(2.7) 		279.6
(3) 		25.3
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 207.6
(-0.3)
P 		359.9
(3)
P 		175.6
(-1)
P 		211.9
(-0.2)
P 		231.4
(0.2)
P 		80.2
(-3)
P 		280
B 320.1
(3)
P 		278.5
(1.9)
P 		264.5
(1.5)
P 		155.8
(-1.3)
P 		304.8
(2.6)
P 		90.7
(-3)
P 		229
C 369.1
(3)
P 		243.6
(0.3)
P 		292.2
(1.3)
P 		114.7
(-2.5)
P 		284.3
(1.2)
P 		92.5
(-3)
P 		277
avr 298.9
(3) 		294
(2.9) 		244.1
(1.4) 		160.8
(-0.9) 		273.5
(2.3) 		87.8
(-3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176968_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18785
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.E NCBI
Target Description Y105E8B.E /REP_DB=WormBase Gene ID /WP=CE23209 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60848.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170938 NCBI Caenorhabditis elegans UNCoordinated family member (unc-95) (unc-95) mRNA, complete cds. 11/11 None
SNAP00000013323 ENSEMBL cdna:SNAP chromosome:CEL140:I:14389573:14391020:-1 11/11 None
GENEFINDER00000013496 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14389573:14392855:-1 11/11 None
Y105E8A.6 ENSEMBL cdna:known chromosome:CEL140:I:14389498:14392855:-1 gene:Y105E8A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14389503-14392786(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-95
Ensembl Y105E8A.6
Entrez Gene 173301 Entrez gene
SwissProt Q9NEZ5 EMBL-EBI
WormBase CE31857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC48121 Hypothetical protein Y105E8A.6 [Caenorhabditis elegans] ref|NP_740934.2| UNCoordinated family member (unc-95) [Caenorhabditis elegans] 1.0E-163
blast CAC48121 Hypothetical protein Y105E8A.6 [Caenorhabditis elegans] ref|NP_740934.2| UNCoordinated family member (unc-95) [Caenorhabditis elegans] 1.0E-160
blast CAE64129 Hypothetical protein CBG08745 [Caenorhabditis briggsae] 1.0E-154
blast CAE64129 Hypothetical protein CBG08745 [Caenorhabditis briggsae] 1.0E-151
blast CAC48121 Hypothetical protein Y105E8A.6 [Caenorhabditis elegans] ref|NP_740934.2| UNCoordinated family member (unc-95) [Caenorhabditis elegans] 1.0E-113
blast CAE64129 Hypothetical protein CBG08745 [Caenorhabditis briggsae] 1.0E-106
blast CAG02498 unnamed protein product [Tetraodon nigroviridis] 2.0E-9
blast CAG02498 unnamed protein product [Tetraodon nigroviridis] 3.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-9
Sequence
Target Sequence 
>C. ELEGANS:176968_S_AT
aaacgcggtgaccgacacattggcggcccttgtttacgatgtcaacgccacgactgaagt
tttgcgtcgtggacaacgtggacgtgacggtgaagatggaaataagaagaagaaggagga
aatcgagtacaccttgagacttacaccggcaccagaggaacaaatcccgcagaggccaaa
gattccagaggacgacaatatggagacagacgactactcccgccaatacggagtccaaat
gtccgaggagaccgatagcctgcgccgccgccgcgcccgaagcacaactccccgccgaac
gctccacatctccggctccccaccgccaccggccgccgcagtctgcgcttactgcagtga
agaaatcgacggcgcgattctgacagcgttggcgccaaactcggaacgggcacagaaatt
ccatacctatcatttcatgtgcacatattgtcagaaggcactcaacatgcatggaaccta
cagagaacatgatctgaagccatattgtcatgattgcttctacaagttgtataatggatt
gcaatacgctccggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGCGGTGACCGACACATTGGCG 65 125 519 Antisense
CACATTGGCGGCCCTTGTTTACGAT 165 181 534 Antisense
GTCAACGCCACGACTGAAGTTTTGC 329 463 559 Antisense
CGAGTACACCTTGAGACTTACACCG 318 247 642 Antisense
GACTTACACCGGCACCAGAGGAACA 690 371 656 Antisense
AGGAACAAATCCCGCAGAGGCCAAA 223 55 674 Antisense
ACTACTCCCGCCAATACGGAGTCCA 309 101 731 Antisense
ATGTCCGAGGAGACCGATAGCCTGC 260 49 757 Antisense
CGACGGCGCGATTCTGACAGCGTTG 678 251 885 Antisense
TTGGCGCCAAACTCGGAACGGGCAC 272 401 907 Antisense
AATGGATTGCAATACGCTCCGGATG 169 163 1051 Antisense
Sequence Source Affymetrix Proprietary Database