[Home] | [Total List]

[176967_at]

Description Y48G9A.N /REP_DB=WormBase Gene ID /WP=CE25331 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60720.1
Cluster 6grp_total > 36      4grp_total > 53      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 88.4
(3)
A 		82.8
(1.8)
A 		62.3
(-2.7)
A 		61.1
(-3)
A 		27
B 90.2
(3)
A 		85.6
(2.5)
A 		72.6
(1.1)
A 		35.9
(-3)
A 		54
C 89.2
(2.6)
A 		92.8
(3)
A 		56.3
(-0.5)
A 		31.1
(-3)
A 		62
avr 89.3
(3) 		87.1
(2.7) 		63.7
(-0.3) 		42.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 22.8
(-0.7)
A 		44.7
(3)
A 		10.4
(-2.7)
A 		8.8
(-3)
A 		17.3
(-1.6)
A 		38.6
(2)
A 		36
B 36
(2.8)
A 		37.4
(3)
A 		7.5
(-2.2)
A 		3.1
(-3)
A 		8
(-2.1)
A 		19.2
(-0.2)
A 		34
C 33.1
(3)
A 		10.4
(-3)
A 		20.1
(-0.4)
A 		13.8
(-2.1)
A 		19.9
(-0.5)
A 		21.5
(-0.1)
A 		23
avr 30.6
(2.9) 		30.8
(3) 		12.7
(-1.9) 		8.6
(-3) 		15.1
(-1.2) 		26.4
(1.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32.2
(3)
A 		18
(-0.7)
A 		16.3
(-1.1)
A 		8.9
(-3)
A 		23
B 28.8
(3)
A 		21.1
(0.8)
A 		16.8
(-0.4)
A 		7.6
(-3)
A 		21
C 29.5
(3)
A 		26.7
(2.3)
A 		19.6
(0.6)
A 		5.2
(-3)
A 		24
avr 30.2
(3) 		21.9
(0.8) 		17.6
(-0.3) 		7.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.2
(-2.1)
A 		15.9
(3)
A 		2.3
(-3)
A 		2.2
(-3)
A 		5.2
(-1.7)
A 		9.4
(0.2)
A 		14
B 12.5
(3)
A 		12.4
(2.9)
A 		1.8
(-2.5)
A 		0.8
(-3)
A 		3.3
(-1.7)
A 		7.2
(0.3)
A 		12
C 12.3
(3)
A 		3.2
(-2.7)
A 		5.1
(-1.5)
A 		2.8
(-3)
A 		6.4
(-0.7)
A 		7.2
(-0.2)
A 		10
avr 9.7
(2.4) 		10.5
(3) 		3.1
(-2.2) 		1.9
(-3) 		5
(-0.8) 		7.9
(1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19038
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.N NCBI
Target Description Y48G9A.N /REP_DB=WormBase Gene ID /WP=CE25331 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60720.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065107 NCBI Caenorhabditis elegans Y48G9A.2 (Y48G9A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015836 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2157639:2197682:1 11/11 None
Y48G9A.2 ENSEMBL cdna:known chromosome:CEL140:III:2166137:2168168:1 gene:Y48G9A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015834 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2166136-2168168(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G9A.2
Entrez Gene 190050 Entrez gene
SwissProt Q9N3M3 EMBL-EBI
WormBase CE25331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29920 Hypothetical protein Y48G9A.1 [Caenorhabditis elegans] ref|NP_497509.2| Y48G9A.1 [Caenorhabditis elegans] 0.0
blast CAE69454 Hypothetical protein CBG15645 [Caenorhabditis briggsae] 0.0
blast CAE69228 Hypothetical protein CBG15268 [Caenorhabditis briggsae] 0.0
blast AAK29919 Hypothetical protein Y48G9A.2 [Caenorhabditis elegans] ref|NP_497508.1| Y48G9A.2 [Caenorhabditis elegans] 1.0E-71
Sequence
Target Sequence 
>C. ELEGANS:176967_AT
aaaatcgcgatgaagccgccggcatcaaaggaaccaaaggaacaagtattcaggatcaaa
tggctgaaattcaactgatccgagaactcgccgcaaaacgtcaaaaagagggaaaactgt
ctgcaaaacagaaacaagtgatggaaaaggagctcgccgccgaaaaagacactcgagatg
ctcttcgtgagctctacgtgacggctgaagccaaattggacgaatgtagagctatggtgg
cggctgatgctgctggagcttttgctagaccagaaatcctcttcgagtactgtatgccgt
tgacccgttcgcttcttgtttcggaagaagccgcccgtcttttccttgcctatcgggatg
cgtgtttcgagcattcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCGCGATGAAGCCGCCGGCAT 435 133 41 Antisense
GAGAACTCGCCGCAAAACGTCAAAA 594 387 122 Antisense
GAGCTCGCCGCCGAAAAAGACACTC 446 387 190 Antisense
AAGACACTCGAGATGCTCTTCGTGA 544 153 206 Antisense
GAGCTCTACGTGACGGCTGAAGCCA 269 387 229 Antisense
GAGCTATGGTGGCGGCTGATGCTGC 531 387 269 Antisense
GATGCTGCTGGAGCTTTTGCTAGAC 646 413 286 Antisense
TGCTAGACCAGAAATCCTCTTCGAG 53 581 303 Antisense
TTCGAGTACTGTATGCCGTTGACCC 663 689 322 Antisense
TTTCCTTGCCTATCGGGATGCGTGT 408 491 381 Antisense
GGGATGCGTGTTTCGAGCATTCGGA 95 497 395 Antisense
Sequence Source Affymetrix Proprietary Database