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[176965_at]

Description Y48G9A.E /REP_DB=WormBase Gene ID /WP=CE25326 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60711.1
Cluster 6grp_total > 99      4grp_total > 42      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 52.5
(-3)
A 		141.4
(3)
P 		109.9
(0.9)
P 		71.9
(-1.7)
A 		89
B 102.1
(2.9)
A 		102.9
(3)
A 		100.2
(2.8)
A 		30.3
(-3)
A 		73
C 42.6
(-3)
A 		107
(3)
P 		75.5
(0.1)
M 		101.1
(2.5)
A 		64
avr 65.7
(-3) 		117.1
(3) 		95.2
(0.4) 		67.8
(-2.8) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 51.4
(-1.2)
A 		66.9
(-0.5)
A 		31.4
(-2.1)
A 		12
(-3)
A 		142.6
(3)
A 		130.7
(2.5)
P 		131
B 54.8
(-0.6)
A 		38.1
(-3)
A 		79.2
(3)
A 		46.4
(-1.8)
A 		64.6
(0.9)
P 		61.8
(0.5)
P 		41
C 32.8
(-3)
A 		46.5
(-1.8)
A 		57.1
(-0.9)
A 		90.4
(1.9)
P 		75
(0.6)
A 		103.9
(3)
A 		71
avr 46.3
(-3) 		50.5
(-2.5) 		55.9
(-1.9) 		49.6
(-2.6) 		94.1
(2.5) 		98.8
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.1
(-0.4)
A 		30.7
(3)
P 		28.7
(2.4)
P 		10.5
(-3)
A 		20
B 32.6
(3)
A 		25.4
(1.3)
A 		23.2
(0.8)
A 		6.5
(-3)
A 		26
C 14.1
(-3)
A 		30.8
(3)
P 		26.3
(1.4)
M 		17
(-2)
A 		17
avr 21.9
(0.6) 		29
(3) 		26.1
(2) 		11.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 9.5
(-2)
A 		23.8
(0.1)
A 		6.8
(-2.4)
A 		3.1
(-3)
A 		43
(3)
A 		31.8
(1.3)
P 		40
B 19.1
(-0.1)
A 		12.7
(-2.8)
A 		19.2
(-0)
A 		12.3
(-3)
A 		26.3
(3)
P 		23.1
(1.6)
P 		14
C 12.2
(-3)
A 		14.2
(-2.5)
A 		14.5
(-2.4)
A 		18.2
(-1.4)
P 		24.3
(0.2)
A 		34.8
(3)
A 		23
avr 13.6
(-2.3) 		16.9
(-1.3) 		13.5
(-2.3) 		11.2
(-3) 		31.2
(3) 		29.9
(2.6) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19028
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.E NCBI
Target Description Y48G9A.E /REP_DB=WormBase Gene ID /WP=CE25326 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60711.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065097
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G9A.10 ENSEMBL cdna:known chromosome:CEL140:III:2082807:2088236:1 gene:Y48G9A.10 None
GENEFINDER00000015838 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2082813:2088619:1 None
NM_065097 NCBI Caenorhabditis elegans Y48G9A.10 (Y48G9A.10) mRNA, complete cds. None
SNAP00000015828 ENSEMBL cdna:SNAP chromosome:CEL140:III:2083318:2116252:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2082812-2088225(+) 97.89 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cpt-3
Ensembl Y48G9A.10
Entrez Gene 190055 Entrez gene
SwissProt Q9N3N3 EMBL-EBI
WormBase CE37434 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29914 Hypothetical protein Y48G9A.10 [Caenorhabditis elegans] ref|NP_497498.2| Y48G9A.10 [Caenorhabditis elegans] 0.0
blast CAB03394 Hypothetical protein F09F3.9 [Caenorhabditis elegans] emb|CAB02911.3| Hypothetical protein F09F3.9 [Caenorhabditis elegans] ref|NP_741637.1| F09F3.9 [Caenorhabditis elegans] 0.0
blast NP_504348 K11D12.4 [Caenorhabditis elegans] gb|AAB94222.1| Hypothetical protein K11D12.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 3.70000004768372
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.5E-62
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497498.2 1 39-61
Y48G9A.10 1 39-61
GENEFINDER00000015838 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:176965_AT
gtaggtaggtctgcctttctactacagggaagcctaccaggggtgtgcggcaaattccaa
attttgccgagctcggaaaattcgaacggagaccgtacggccagtgaccagtgcttcctg
caagctcgcctgcctatgtacctgcctagtttgtgcctaggctgtacgtaccagcctatg
ttgatcagttttcagaaacaaacccgaagacaactgctgaaagaagcctgcgaagttcat
gtgaacaattgtaaagaggttatgcttggaaacgggttcgatcgtcatctttttgtgctt
tgtgtcattgcgaagggcctcgggtacaatagcccgttccttgactttttctcaagtcag
aagtggctcctgagcactagtaatatcccaaacatgacaaactccattgccgaggacacc
tctgtgaacaatataatgctcggcggctccttcggtgcagttgctcaagatgggtatgga
atttgctatcgatttggtggaaatcatgcgatattggttcacatcacctcttatcattct
tcggaactcactgactcggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGGTAGGTCTGCCTTTCTACTAC 553 455 1621 Antisense
CAGGGAAGCCTACCAGGGGTGTGCG 249 201 1645 Antisense
GAACGGAGACCGTACGGCCAGTGAC 382 345 1704 Antisense
TATGTACCTGCCTAGTTTGTGCCTA 347 655 1755 Antisense
GTACGTACCAGCCTATGTTGATCAG 275 459 1784 Antisense
GATCGTCATCTTTTTGTGCTTTGTG 138 419 1900 Antisense
GCCTCGGGTACAATAGCCCGTTCCT 432 281 1937 Antisense
GGCTCCTGAGCACTAGTAATATCCC 167 539 1985 Antisense
ACAATATAATGCTCGGCGGCTCCTT 501 113 2048 Antisense
ATTGGTTCACATCACCTCTTATCAT 534 3 2133 Antisense
TCTTCGGAACTCACTGACTCGGAGA 633 615 2158 Antisense
Sequence Source Affymetrix Proprietary Database