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[176961_at]

Description Y105E8B.F /REP_DB=WormBase Gene ID /WP=CE25708 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60849.1
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 33      6grp_total > 06      4grp_total > 46      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 381.8
(3)
P 		137.7
(-2.2)
P 		100
(-3)
A 		144
(-2.1)
A 		282
B 362.2
(3)
P 		180.2
(-1)
P 		90.8
(-3)
A 		117.2
(-2.4)
P 		271
C 370.3
(3)
P 		156
(-1.6)
P 		93.4
(-3)
P 		129.6
(-2.2)
P 		277
avr 371.4
(3) 		158
(-1.6) 		94.7
(-3) 		130.3
(-2.2) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 323.4
(3)
P 		189.1
(0)
P 		116.7
(-1.6)
P 		89.3
(-2.2)
A 		71.6
(-2.5)
A 		50.9
(-3)
P 		273
B 320
(3)
P 		235
(0.9)
P 		102.3
(-2.4)
P 		119.2
(-2)
P 		87.1
(-2.8)
A 		79
(-3)
A 		241
C 292.9
(3)
P 		227.8
(1.3)
P 		106.1
(-1.8)
P 		73.9
(-2.7)
A 		124.9
(-1.3)
P 		60.5
(-3)
P 		232
avr 312.1
(3) 		217.3
(0.7) 		108.4
(-1.9) 		94.1
(-2.3) 		94.5
(-2.3) 		63.5
(-3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 139
(3)
P 		29.9
(-2.6)
P 		26.1
(-2.7)
A 		21.1
(-3)
A 		118
B 115.5
(3)
P 		44.5
(-1.5)
P 		21
(-3)
A 		25
(-2.7)
P 		95
C 122.6
(3)
P 		44.8
(-1.6)
P 		32.6
(-2.4)
P 		21.9
(-3)
P 		101
avr 125.7
(3) 		39.7
(-2) 		26.6
(-2.8) 		22.7
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 59.6
(2.2)
P 		67.2
(3)
P 		25.4
(-1.6)
P 		22.7
(-1.9)
A 		21.6
(-2)
A 		12.4
(-3)
P 		55
B 111.3
(3)
P 		78.2
(0.7)
P 		24.8
(-3)
P 		31.6
(-2.5)
P 		35.4
(-2.3)
A 		29.5
(-2.7)
A 		87
C 108.6
(3)
P 		69.5
(0.5)
P 		27
(-2.2)
P 		14.9
(-3)
A 		40.4
(-1.4)
P 		20.2
(-2.7)
P 		94
avr 93.2
(3) 		71.6
(1.2) 		25.7
(-2.6) 		23.1
(-2.8) 		32.5
(-2) 		20.7
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18791
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.F NCBI
Target Description Y105E8B.F /REP_DB=WormBase Gene ID /WP=CE25708 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60849.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026521(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026521 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-18) (eat-18) mRNA, complete cds. 9/11 None
GENEFINDER00000013504 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14398501:14408023:1 11/11 None
Y105E8A.7b ENSEMBL cdna:known chromosome:CEL140:I:14398501:14407749:1 gene:Y105E8A.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026520 4/11 Cross Hyb Matching Probes None
SNAP00000013327 4/11 Cross Hyb Matching Probes None
Y105E8A.7a 4/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173302 4 1 NM_001026520 174766_at (11), 176962_s_at (11)
NM_001026521 174766_at (11), 176961_at (9), 176962_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14400055-14407954(+) 99.94 100.0
Public Domain and Genome References
Ensembl Y105E8A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAF31497 Hypothetical protein Y105E8A.7b [Caenorhabditis elegans] ref|NP_001021692.1| EATing: abnormal pharyngeal pumping family member (eat-18) [Caenorhabditis elegans] tpe|CAE82299.1| TPA: LEV-10B [Caenorhabditis elegans] 0.0
blast CAD21658 Hypothetical protein Y105E8A.7a [Caenorhabditis elegans] ref|NP_001021691.1| EATing: abnormal pharyngeal pumping family member (eat-18) [Caenorhabditis elegans] tpe|CAE82298.1| TPA: LEV-10A protein [Caenorhabditis elegans] 0.0
blast CAE64130 Hypothetical protein CBG08746 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 2.3E-10
Pfam IPR000859 EMBL-EBI CUB 3.9E-19
Pfam IPR000859 EMBL-EBI CUB 1.1E-6
Pfam IPR000859 EMBL-EBI CUB 9.3E-19
Pfam IPR000859 EMBL-EBI CUB 4.3E-13
Pfam IPR000859 EMBL-EBI CUB 2.3E-10
Pfam IPR000859 EMBL-EBI CUB 3.9E-19
Pfam IPR000859 EMBL-EBI CUB 1.1E-6
Pfam IPR000859 EMBL-EBI CUB 9.3E-19
Pfam IPR000859 EMBL-EBI CUB 4.3E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021692.1 1 817-839
Y105E8A.7b 1 817-839
GENEFINDER00000013504 2 96-118,981-1003
Sequence
Target Sequence 
>C. ELEGANS:176961_AT
gttcaatctgtcgtggaccgaggtgaagaatctcagtgggaaggatgaaaatgtttgtaa
atcggattcgctgtacttgtgcacttattcgaagctgtgcattgacgccaagctgaggtg
caatgggcttgataattgtggatatggagttcaggatgatactgatgaacagcattgtca
aaactactctccacggacgttctacacggcgaagttcatggcaacatcctcttctgctac
agttgctttaacaattctaataatcgtaatgcttgtgcttcctgcaatactttgtttgat
tcagaaaacatttgaaaacatagtttctttcaggctcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATCTGTCGTGGACCGAGGTG 18 445 2541 Antisense
GGATTCGCTGTACTTGTGCACTTAT 451 509 2604 Antisense
ATTCGAAGCTGTGCATTGACGCCAA 492 9 2627 Antisense
GACGCCAAGCTGAGGTGCAATGGGC 240 381 2644 Antisense
AGCATTGTCAAAACTACTCTCCACG 201 77 2711 Antisense
CACGGACGTTCTACACGGCGAAGTT 232 197 2732 Antisense
GGCGAAGTTCATGGCAACATCCTCT 181 543 2748 Antisense
TCCTCTTCTGCTACAGTTGCTTTAA 436 593 2767 Antisense
TAATCGTAATGCTTGTGCTTCCTGC 247 635 2801 Antisense
GTGCTTCCTGCAATACTTTGTTTGA 662 479 2815 Antisense
AAACATAGTTTCTTTCAGGCTCACT 630 127 2856 Antisense
Sequence Source Affymetrix Proprietary Database