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[176960_at]

Description Y67D8C.J /REP_DB=WormBase Gene ID /WP=CE26234 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23378.1
Cluster 6grp_total > 54      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 12.9
(-2.9)
A 		11.1
(-3)
A 		28.4
(-2.1)
A 		129.9
(3)
A 		119
B 57.7
(3)
A 		51.4
(2.3)
A 		7
(-3)
A 		47.3
(1.8)
A 		51
C 57.6
(0.2)
A 		12
(-3)
A 		29
(-1.8)
A 		98.6
(3)
A 		87
avr 42.7
(-1.2) 		24.8
(-2.7) 		21.5
(-3) 		91.9
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.2
(-1.7)
A 		9.4
(-2.1)
A 		33.1
(3)
A 		8.7
(-2.3)
A 		11.3
(-1.7)
A 		5.4
(-3)
A 		28
B 12.1
(3)
A 		8.5
(-0.5)
A 		10.5
(1.4)
A 		9.4
(0.3)
A 		10.7
(1.6)
A 		6
(-3)
A 		6
C 6.1
(-2.9)
A 		15.2
(-1.4)
A 		41.9
(3)
A 		5.6
(-3)
A 		7.1
(-2.8)
A 		40.2
(2.7)
A 		36
avr 9.8
(-2.4) 		11
(-2.1) 		28.5
(3) 		7.9
(-3) 		9.7
(-2.5) 		17.2
(-0.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.7
(-2.2)
A 		2.4
(-3)
A 		7.4
(-1.2)
A 		19
(3)
A 		17
B 18.4
(3)
A 		12.7
(1)
A 		1.6
(-3)
A 		10.1
(0)
A 		17
C 19.1
(3)
A 		3.5
(-3)
A 		10.1
(-0.5)
A 		16.6
(2)
A 		16
avr 14.1
(2.3) 		6.2
(-3) 		6.4
(-2.9) 		15.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.1
(-2.2)
A 		3.3
(-1)
A 		7.2
(3)
A 		2.2
(-2.1)
A 		3.4
(-0.9)
A 		1.3
(-3)
A 		6
B 4.2
(2.7)
A 		2.8
(-1.3)
A 		2.6
(-1.9)
A 		2.5
(-2.1)
A 		4.3
(3)
A 		2.2
(-3)
A 		2
C 2.3
(-2.4)
A 		4.6
(-1.3)
A 		10.7
(1.6)
A 		1.1
(-3)
A 		2.3
(-2.4)
A 		13.5
(3)
A 		12
avr 2.9
(-1.8) 		3.6
(-0.9) 		6.8
(3) 		1.9
(-3) 		3.3
(-1.3) 		5.7
(1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19353
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.J NCBI
Target Description Y67D8C.J /REP_DB=WormBase Gene ID /WP=CE26234 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23378.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067884 NCBI Caenorhabditis elegans Y67D8C.4 (Y67D8C.4) mRNA, complete cds. 11/11 None
Y67D8C.4 ENSEMBL cdna:known chromosome:CEL140:IV:3050412:3055658:1 gene:Y67D8C.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001610 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001630 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3050417-3055664(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.4
Entrez Gene 190519 Entrez gene
SwissProt Q9GUN9 EMBL-EBI
WormBase CE26234 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23378 Hypothetical protein Y67D8C.4 [Caenorhabditis elegans] ref|NP_500285.1| Y67D8C.4 [Caenorhabditis elegans] 1.0E-169
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500285.1 2 271-293,297-319
Y67D8C.4 2 271-293,297-319
Sequence
Target Sequence 
>C. ELEGANS:176960_AT
tcttcacgaatcttcagctgcggattcagaagatacgtcagctccggatttcgatcgagg
aatgagctcaacatctcatcacaaagaactgggcaggtgcccgctcgaggtactacattc
aattcacaatttcgagccatcgactccacaagccgtttttgagctggatgaaagttcaaa
ttgtcaagaatcgatcgataatccaatgaaacgacaaaagcattttgtgagcagatttct
tctccgcaagcaccaagcacgaagaactgtaattagccatggagcgcgtatgctcgctta
cattgtctgcgttctccacttttccggttgtctctcgcattttttcaaacaatttatttt
ttcttggtttttcgcctttttcactggattttaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCACGAATCTTCAGCTGCGGAT 496 615 546 Antisense
GTCAGCTCCGGATTTCGATCGAGGA 518 465 582 Antisense
AAAGAACTGGGCAGGTGCCCGCTCG 572 119 628 Antisense
CCCGCTCGAGGTACTACATTCAATT 69 261 645 Antisense
TCACAATTTCGAGCCATCGACTCCA 35 629 669 Antisense
TCGACTCCACAAGCCGTTTTTGAGC 567 601 685 Antisense
TGTGAGCAGATTTCTTCTCCGCAAG 563 555 771 Antisense
ATGGAGCGCGTATGCTCGCTTACAT 556 51 824 Antisense
TCGCTTACATTGTCTGCGTTCTCCA 121 601 839 Antisense
GTTGTCTCTCGCATTTTTTCAAACA 458 437 872 Antisense
TCGCCTTTTTCACTGGATTTTACCG 173 599 917 Antisense
Sequence Source Affymetrix Proprietary Database