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[176958_at]

Description Y48G9A.J /REP_DB=WormBase Gene ID /WP=CE25328 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60716.1
Cluster 6grp_total > 53      4grp_total > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 21.5
(-1.7)
A 		79.6
(3)
A 		5
(-3)
A 		24.5
(-1.4)
A 		75
B 37.3
(1)
A 		20.3
(-1.3)
A 		51.4
(3)
A 		8.2
(-3)
A 		43
C 12.9
(-3)
A 		33.1
(3)
A 		29.8
(2)
A 		14.8
(-2.4)
A 		20
avr 23.9
(-1.3) 		44.3
(3) 		28.7
(-0.3) 		15.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 30.8
(-0.2)
A 		31
(-0.2)
A 		38.3
(0.7)
A 		6.1
(-3)
A 		58.9
(3)
A 		44.1
(1.3)
A 		53
B 19.5
(-3)
A 		44.9
(3)
A 		44.4
(2.9)
A 		22.5
(-2.3)
A 		29.6
(-0.6)
A 		21.3
(-2.6)
A 		25
C 28.6
(-1.3)
A 		50.8
(0.8)
A 		73.9
(3)
A 		11.4
(-3)
A 		43.8
(0.1)
A 		30.6
(-1.2)
A 		63
avr 26.3
(-1) 		42.2
(1.5) 		52.2
(3) 		13.3
(-3) 		44.1
(1.8) 		32
(-0.1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.8
(-0.6)
A 		17.3
(3)
A 		1.3
(-3)
A 		3.6
(-2.1)
A 		16
B 11.9
(3)
A 		5
(-1.1)
A 		11.9
(3)
A 		1.8
(-3)
A 		10
C 4.3
(-1.6)
A 		9.5
(2.3)
A 		10.4
(3)
A 		2.5
(-3)
A 		8
avr 8
(1.1) 		10.6
(3) 		7.9
(1) 		2.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.7
(-1.5)
A 		11
(0.5)
A 		8.3
(-0.5)
A 		1.6
(-3)
A 		17.8
(3)
A 		10.7
(0.4)
A 		16
B 6.8
(-2.5)
A 		15
(3)
A 		10.8
(0.2)
A 		6
(-3)
A 		12
(1)
A 		7.9
(-1.7)
A 		9
C 10.6
(0)
A 		15.5
(1.8)
A 		18.8
(3)
A 		2.3
(-3)
A 		14.2
(1.3)
A 		10.2
(-0.1)
A 		17
avr 7.7
(-0.7) 		13.8
(2.5) 		12.6
(1.9) 		3.3
(-3) 		14.7
(3) 		9.6
(0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19055
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.J NCBI
Target Description Y48G9A.J /REP_DB=WormBase Gene ID /WP=CE25328 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60716.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065102(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065102 NCBI Caenorhabditis elegans Y48G9A.6 (Y48G9A.6) mRNA, complete cds. 10/11 None
GENEFINDER00000015840 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2117807:2119079:1 11/11 None
Y48G9A.6 ENSEMBL cdna:known chromosome:CEL140:III:2117830:2119079:1 gene:Y48G9A.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015831 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2117829-2119079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G9A.6
Entrez Gene 190053 Entrez gene
SwissProt Q9N3M7 EMBL-EBI
WormBase CE35094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29916 Hypothetical protein Y48G9A.6 [Caenorhabditis elegans] ref|NP_497503.2| Y48G9A.6 [Caenorhabditis elegans] 1.0E-162
blast AAK29916 Hypothetical protein Y48G9A.6 [Caenorhabditis elegans] ref|NP_497503.2| Y48G9A.6 [Caenorhabditis elegans] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:176958_AT
gggtggttctcctgaaattccgagcaattccattcatcacaagactgctcttgcttctgc
tgaacaactcactacgcttgaacatatcacaaagttcttggaattattcgaagcggccat
tgcaaccagggattggtatcaaattgagaaacgcttcggaaaatatttctttctcgaaag
atgttggatcgataatcattatacgctgcgtacttctagaaccgaattcatcacaatgtt
aactaatattcctcggaacaatgatgtatctttcgatctcctgtcgtatcatggagaggt
gtatggtgggcgtctaactgactctatctccatcgaagtgacaatatccggaattatggc
gactccactccgttttaaatttatgtttagccaccgcggatacttgttggaaatagggca
tcggattgagtgtgagtatgtacgatttgcggatgatgaaaattatgatgtcggacacga
attcgctgttgctccggcctcttcaggagctctgagtcctacagttgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGGTTCTCCTGAAATTCCGAGC 373 497 321 Antisense
ATTCCGAGCAATTCCATTCATCACA 294 9 337 Antisense
CTCTTGCTTCTGCTGAACAACTCAC 432 229 368 Antisense
TATTCGAAGCGGCCATTGCAACCAG 640 663 425 Antisense
ATACGCTGCGTACTTCTAGAACCGA 144 23 521 Antisense
TATCTTTCGATCTCCTGTCGTATCA 271 659 587 Antisense
GGTGTATGGTGGGCGTCTAACTGAC 36 501 618 Antisense
TAACTGACTCTATCTCCATCGAAGT 242 637 635 Antisense
TTAGCCACCGCGGATACTTGTTGGA 14 681 707 Antisense
GTCGGACACGAATTCGCTGTTGCTC 150 473 790 Antisense
GGAGCTCTGAGTCCTACAGTTGAAC 54 521 826 Antisense
Sequence Source Affymetrix Proprietary Database