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[176957_at]

Description Y105E8B.D /REP_DB=WormBase Gene ID /WP=CE23210 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60847.1
Cluster 6grp_total > 71      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 7
(-3)
A 		71.9
(3)
A 		37.2
(-0.2)
A 		60.1
(1.9)
A 		65
B 6.7
(-3)
A 		7.6
(-2.8)
A 		16.8
(-0.4)
A 		29.9
(3)
A 		23
C 11.4
(-3)
A 		19.3
(-2.5)
A 		37.3
(-1.5)
A 		115.9
(3)
A 		105
avr 8.4
(-3) 		32.9
(-0.6) 		30.4
(-0.8) 		68.6
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 41.2
(2.9)
A 		5.3
(-3)
A 		41.8
(3)
A 		26.4
(0.5)
A 		30.9
(1.2)
A 		11.7
(-1.9)
A 		37
B 7
(-2.8)
A 		23.6
(-0.4)
A 		9.3
(-2.5)
A 		47
(3)
A 		39
(1.8)
A 		5.5
(-3)
A 		42
C 15.8
(-1.1)
A 		39.1
(3)
A 		27.9
(1)
A 		19.5
(-0.4)
A 		5
(-3)
A 		27.6
(1)
A 		34
avr 21.3
(-0.6) 		22.7
(-0.1) 		26.3
(1.2) 		31
(3) 		25
(0.8) 		14.9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.5
(-3)
A 		15.6
(3)
A 		9.7
(0.3)
A 		8.8
(-0.1)
A 		13
B 2.1
(-2.7)
A 		1.9
(-3)
A 		3.9
(-0.3)
A 		6.4
(3)
A 		5
C 3.8
(-3)
A 		5.6
(-2.3)
A 		13
(0.5)
A 		19.5
(3)
A 		16
avr 2.8
(-3) 		7.7
(0.3) 		8.9
(1.2) 		11.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.6
(1.6)
A 		1.9
(-3)
A 		9.1
(2.8)
A 		6.7
(0.9)
A 		9.3
(3)
A 		2.8
(-2.3)
A 		7
B 2.4
(-2.8)
A 		7.9
(-0.5)
A 		2.3
(-2.9)
A 		12.5
(1.5)
A 		15.9
(3)
A 		2
(-3)
A 		14
C 5.8
(-0.6)
A 		11.9
(3)
A 		7.1
(0.2)
A 		3.9
(-1.7)
A 		1.6
(-3)
A 		9.2
(1.4)
A 		10
avr 5.3
(-2.1) 		7.2
(0.6) 		6.2
(-0.9) 		7.7
(1.3) 		8.9
(3) 		4.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18780
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.D NCBI
Target Description Y105E8B.D /REP_DB=WormBase Gene ID /WP=CE23210 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60847.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026519 NCBI Caenorhabditis elegans Y105E8A.32 (Y105E8A.32) mRNA, complete cds. 11/11 None
SNAP00000013322 ENSEMBL cdna:SNAP chromosome:CEL140:I:14386504:14387386:-1 11/11 None
GENEFINDER00000013502 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14386504:14387492:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14386434-14387423(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565435 Entrez gene
SwissProt Q56VX5 EMBL-EBI
WormBase CE38439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79186 Hypothetical protein Y105E8A.32 [Caenorhabditis elegans] ref|NP_001021690.1| Y105E8A.32 [Caenorhabditis elegans] 3.0E-45
blast CAI79186 Hypothetical protein Y105E8A.32 [Caenorhabditis elegans] ref|NP_001021690.1| Y105E8A.32 [Caenorhabditis elegans] 2.0E-39
blast CAI79186 Hypothetical protein Y105E8A.32 [Caenorhabditis elegans] ref|NP_001021690.1| Y105E8A.32 [Caenorhabditis elegans] 4.0E-38
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:176957_AT
cgcccacgcattttcattggtgcaagacgagtttgcgcggctcccccgtgtcctgcaact
gttatgatgacatggcaaaacggtgtctctacggtacctgcccttgcaaatcctcccaat
gtatttgatgcgtcaggagattgtttgtcactggtcactgggcctgctggaggtggatat
gatgatactctatgcacatttccggtggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCACGCATTTTCATTGGTGCAA 284 257 82 Antisense
GGTGCAAGACGAGTTTGCGCGGCTC 182 501 100 Antisense
CCCGTGTCCTGCAACTGTTATGATG 242 261 126 Antisense
GTTATGATGACATGGCAAAACGGTG 525 1 142 Antisense
CAAAACGGTGTCTCTACGGTACCTG 196 185 157 Antisense
CTTGCAAATCCTCCCAATGTATTTG 419 5 184 Antisense
ATCCTCCCAATGTATTTGATGCGTC 185 39 191 Antisense
TGCGTCAGGAGATTGTTTGTCACTG 422 581 210 Antisense
GGAGATTGTTTGTCACTGGTCACTG 59 519 217 Antisense
GTGGATATGATGATACTCTATGCAC 47 491 254 Antisense
TACTCTATGCACATTTCCGGTGGCC 428 645 267 Antisense
Sequence Source Affymetrix Proprietary Database