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[176956_at]

Description Y48G9A.C /REP_DB=WormBase Gene ID /WP=CE25324 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60709.1
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 90      6grp_total > 96      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 69.6
(-2.9)
P 		68.1
(-3)
P 		158.6
(3)
P 		97.2
(-1.1)
P 		91
B 59.9
(-3)
P 		115.4
(3)
P 		96.3
(0.9)
P 		90.9
(0.4)
P 		56
C 120
(2.5)
P 		107.6
(1.1)
P 		71.9
(-3)
P 		124.5
(3)
P 		53
avr 83.2
(-3) 		97
(0.2) 		108.9
(3) 		104.2
(1.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 102.7
(-1.2)
P 		59
(-3)
P 		95.1
(-1.5)
P 		133.7
(0)
P 		195.7
(2.6)
P 		206.5
(3)
P 		148
B 60.1
(-3)
P 		76.6
(-2.3)
P 		121.2
(-0.5)
P 		112.9
(-0.8)
P 		183.8
(2.1)
P 		206.6
(3)
P 		147
C 57.2
(-3)
P 		87.5
(-1.5)
P 		91.9
(-1.2)
P 		111.7
(-0.2)
P 		175.2
(3)
P 		167
(2.6)
P 		118
avr 73.3
(-3) 		74.4
(-2.9) 		102.7
(-1.5) 		119.4
(-0.7) 		184.9
(2.6) 		193.4
(3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25.3
(-0.6)
P 		14.8
(-2.9)
P 		41.5
(3)
P 		14.2
(-3)
P 		27
B 19.1
(-3)
P 		28.5
(3)
P 		22.3
(-1)
P 		19.4
(-2.8)
P 		9
C 39.7
(3)
P 		30.9
(0.2)
P 		25.1
(-1.7)
P 		21
(-3)
P 		19
avr 28
(2.2) 		24.7
(0.4) 		29.6
(3) 		18.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 18.9
(-3)
P 		21
(-2.7)
P 		20.7
(-2.7)
P 		33.9
(-0.8)
P 		59
(3)
P 		50.3
(1.7)
P 		40
B 20.9
(-3)
P 		25.5
(-2.5)
P 		29.4
(-2.1)
P 		29.9
(-2)
P 		74.7
(2.8)
P 		77
(3)
P 		56
C 21.2
(-3)
P 		26.7
(-2.1)
P 		23.4
(-2.6)
P 		22.5
(-2.8)
P 		56.7
(3)
P 		55.9
(2.9)
P 		36
avr 20.3
(-3) 		24.4
(-2.4) 		24.5
(-2.4) 		28.8
(-1.8) 		63.5
(3) 		61.1
(2.7) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18994
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.C NCBI
Target Description Y48G9A.C /REP_DB=WormBase Gene ID /WP=CE25324 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60709.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065101 NCBI Caenorhabditis elegans Y48G9A.11 (Y48G9A.11) mRNA, complete cds. 11/11 None
Y48G9A.11 ENSEMBL cdna:known chromosome:CEL140:III:2112482:2116871:-1 gene:Y48G9A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015846 7/11 Cross Hyb Matching Probes None
SNAP00000015829 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2112481-2116871(-) 98.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G9A.11
Entrez Gene 190056 Entrez gene
SwissProt Q9N3M8 EMBL-EBI
WormBase CE25324 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29913 Hypothetical protein Y48G9A.11 [Caenorhabditis elegans] ref|NP_497502.1| Y48G9A.11 [Caenorhabditis elegans] 0.0
blast AAK18978 Hypothetical protein T20F7.1 [Caenorhabditis elegans] ref|NP_510727.2| T20F7.1 [Caenorhabditis elegans] 1.0E-39
blast CAE71004 Hypothetical protein CBG17840 [Caenorhabditis briggsae] 4.0E-33
Sequence
Target Sequence 
>C. ELEGANS:176956_AT
tcccgatttgtgcacacgtccggaagatacactaccaccggaaaaactagacgctattca
tgtttcttcaccaaatcccagcagcctacagacaaggagccacgtggagcccgtaatcgg
ccaacgaaaaagctaaaaagggcttgtaccgcccatatatcggtcagggagacttttggc
caaatccacgtccgtgcttgtctttttcactgtggacacgagcatttggtgaacaatttg
ccgctttcaacgatcgttcgaaaggaaattgcgacgcttttgatccgaggagaaacaccg
gaagaaattgttgaaaaactcagaaaaaattcaaattccaccgatcgtcgcttctacatt
cgtccgtatgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGATTTGTGCACACGTCCGGAA 363 595 574 Antisense
CACGTCCGGAAGATACACTACCACC 38 183 588 Antisense
TAGACGCTATTCATGTTTCTTCACC 306 653 621 Antisense
AAATCCCAGCAGCCTACAGACAAGG 684 117 646 Antisense
TGGAGCCCGTAATCGGCCAACGAAA 93 547 678 Antisense
GCTTGTACCGCCCATATATCGGTCA 582 305 715 Antisense
GAGACTTTTGGCCAAATCCACGTCC 197 393 742 Antisense
CGTGCTTGTCTTTTTCACTGTGGAC 279 245 766 Antisense
ACAATTTGCCGCTTTCAACGATCGT 133 113 806 Antisense
ATTGCGACGCTTTTGATCCGAGGAG 294 3 841 Antisense
CGCTTCTACATTCGTCCGTATGAAA 511 255 922 Antisense
Sequence Source Affymetrix Proprietary Database