[Home] | [Total List]

[176952_at]

Description Y105E8B.M /REP_DB=WormBase Gene ID /WP=CE25173 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60856.1
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 30      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 76      6grp_total > 43      4grp_total > 59      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 742
1 2 3 4 range
A 1045.4
(0.9)
P 		1149.3
(2)
P 		1248.5
(3)
P 		656.8
(-3)
P 		592
B 997.5
(0.6)
P 		1156.4
(1.9)
P 		1295
(3)
P 		552.6
(-3)
P 		742
C 985.1
(1.9)
P 		967.9
(1.6)
P 		1066.2
(3)
P 		636.2
(-3)
P 		430
avr 1009.3
(1) 		1091.2
(1.9) 		1203.2
(3) 		615.2
(-3) 		588

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 587
1 2 3 4 5 6 range
A 1251
(2.7)
P 		943.3
(-1.1)
P 		1274.5
(3)
P 		963
(-0.9)
P 		874.8
(-2)
P 		790.4
(-3)
P 		484
B 1042.8
(-1)
P 		1015.2
(-1.3)
P 		1377.1
(3)
P 		872
(-3)
P 		1064.2
(-0.7)
P 		937.9
(-2.2)
P 		505
C 1077.5
(2.3)
P 		1099.4
(2.9)
P 		1103.3
(3)
P 		946.4
(-1)
P 		866.8
(-3)
P 		1079
(2.4)
P 		237
avr 1123.8
(0.6) 		1019.3
(-1.3) 		1251.6
(3) 		927.1
(-3) 		935.3
(-2.8) 		935.8
(-2.8) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 380.6
(3)
P 		249.5
(0.2)
P 		326.4
(1.9)
P 		96.1
(-3)
P 		285
B 318.1
(3)
P 		285.6
(2)
P 		300.1
(2.5)
P 		117.8
(-3)
P 		200
C 326.1
(2)
P 		278.3
(0.9)
P 		371.6
(3)
P 		107.3
(-3)
P 		264
avr 341.6
(3) 		271.1
(1.2) 		332.7
(2.8) 		107.1
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 230.6
(-1.4)
P 		335.5
(3)
P 		277.6
(0.6)
P 		244.2
(-0.8)
P 		264
(0)
P 		192.4
(-3)
P 		143
B 362.8
(0.9)
P 		337.9
(0.2)
P 		334.4
(0.1)
P 		231
(-3)
P 		432.4
(3)
P 		349.7
(0.5)
P 		201
C 399.4
(3)
P 		335.4
(1.2)
P 		280.8
(-0.4)
P 		190.3
(-3)
P 		280.5
(-0.4)
P 		361.2
(1.9)
P 		209
avr 330.9
(2.7) 		336.3
(3) 		297.6
(1) 		221.8
(-3) 		325.6
(2.4) 		301.1
(1.2) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18781
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.M NCBI
Target Description Y105E8B.M /REP_DB=WormBase Gene ID /WP=CE25173 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60856.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170943 NCBI Caenorhabditis elegans Y105E8A.11 (Y105E8A.11) mRNA, complete cds. 11/11 None
SNAP00000013329 ENSEMBL cdna:SNAP chromosome:CEL140:I:14409618:14441788:1 11/11 None
GENEFINDER00000013505 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14440911:14441788:1 11/11 None
Y105E8A.11 ENSEMBL cdna:known chromosome:CEL140:I:14440911:14441906:1 gene:Y105E8A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14440841-14441719(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.11
Entrez Gene 173306 Entrez gene
SwissProt Q9NEY7 EMBL-EBI
WormBase CE25173 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
30528 transcription regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC48128 Hypothetical protein Y105E8A.10c [Caenorhabditis elegans] ref|NP_001021682.1| Y105E8A.10c [Caenorhabditis elegans] 0.0
blast CAH04764 Hypothetical protein Y105E8A.10b [Caenorhabditis elegans] ref|NP_001021681.1| Y105E8A.10b [Caenorhabditis elegans] 0.0
blast CAD21661 Hypothetical protein Y105E8A.10a [Caenorhabditis elegans] ref|NP_001021680.1| Y105E8A.10a [Caenorhabditis elegans] 0.0
blast CAC48129 Hypothetical protein Y105E8A.11 [Caenorhabditis elegans] ref|NP_740939.1| Y105E8A.11 [Caenorhabditis elegans] 3.0E-54
blast CAE64134 Hypothetical protein CBG08750 [Caenorhabditis briggsae] 8.0E-44
blast XP_855121 PREDICTED: similar to bolA-like 3 [Canis familiaris] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002634 EMBL-EBI BolA-like protein 2.7E-13
Pfam IPR002634 EMBL-EBI BolA-like protein 2.7E-13
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.4E-13
Pfam IPR006775 EMBL-EBI Protein of unknown function DUF608 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176952_AT
gcgtcactcggcatgttgtggtggagagcacaaaatgtcagaagccgagctgaaaatgag
caagttgctcactgagggaattgatggatgtactcgtgtcgaggttcacgatgtttctaa
tggctgcggatcaatgttcgacgtggtcgttgaagccgccggtttcaagggaaaatcgaa
agttgctcaacacaaacaggtcacctccattctccgggagcagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCACTCGGCATGTTGTGGTGGA 145 289 66 Antisense
GAGCACAAAATGTCAGAAGCCGAGC 700 389 91 Antisense
GAGCAAGTTGCTCACTGAGGGAATT 189 391 123 Antisense
GGGAATTGATGGATGTACTCGTGTC 10 495 141 Antisense
GGATGTACTCGTGTCGAGGTTCACG 117 515 151 Antisense
GTTCACGATGTTTCTAATGGCTGCG 413 443 169 Antisense
ATGGCTGCGGATCAATGTTCGACGT 564 53 185 Antisense
GTTCGACGTGGTCGTTGAAGCCGCC 378 441 201 Antisense
TCGTTGAAGCCGCCGGTTTCAAGGG 312 599 212 Antisense
AACACAAACAGGTCACCTCCATTCT 227 135 254 Antisense
CACCTCCATTCTCCGGGAGCAGATT 192 201 267 Antisense
Sequence Source Affymetrix Proprietary Database