[Home] | [Total List]

[176948_s_at]

Description Y48G1C.C /REP_DB=WormBase Gene ID /WP=CE22175 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60698.1
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 31      4grp_total > 07      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 142.4
(-0.9)
P 		111.8
(-2.2)
P 		93.7
(-3)
P 		231
(3)
P 		137
B 143.1
(3)
P 		81.8
(-3)
P 		129.6
(1.7)
P 		130.4
(1.8)
P 		61
C 136.4
(1.8)
P 		70.1
(-3)
P 		117.8
(0.4)
P 		153.2
(3)
P 		83
avr 140.6
(0.8) 		87.9
(-3) 		113.7
(-1.1) 		171.5
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 145.8
(0.2)
P 		166.3
(1.6)
P 		186.3
(3)
P 		134
(-0.6)
P 		100
(-3)
P 		112.7
(-2.1)
P 		86
B 145.2
(2)
P 		151.1
(2.5)
P 		156.4
(3)
P 		108.8
(-1.4)
P 		108.7
(-1.4)
P 		91.4
(-3)
P 		65
C 134.3
(-0.2)
P 		142.9
(0.5)
P 		164.8
(2.5)
P 		170.2
(3)
P 		127.5
(-0.9)
P 		103.7
(-3)
P 		67
avr 141.8
(0.5) 		153.4
(1.6) 		169.2
(3) 		137.7
(0.2) 		112.1
(-2.1) 		102.6
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 51.8
(3)
P 		24.3
(-3)
P 		24.5
(-3)
P 		33.8
(-0.9)
P 		28
B 45.6
(3)
P 		20.2
(-3)
P 		30
(-0.7)
P 		27.8
(-1.2)
P 		25
C 45.1
(3)
P 		20.1
(-3)
P 		41.1
(2)
P 		25.8
(-1.6)
P 		25
avr 47.5
(3) 		21.5
(-3) 		31.9
(-0.6) 		29.1
(-1.2) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 26.9
(-3)
P 		59.1
(3)
P 		40.6
(-0.4)
P 		34
(-1.7)
P 		30.2
(-2.4)
P 		27.4
(-2.9)
P 		32
B 50.5
(3)
P 		50.3
(2.9)
P 		38
(-0.5)
P 		28.8
(-3)
P 		44.2
(1.3)
P 		34.1
(-1.5)
P 		22
C 49.8
(3)
P 		43.6
(0.6)
P 		41.9
(-0)
P 		34.2
(-3)
P 		41.3
(-0.3)
P 		34.7
(-2.8)
P 		16
avr 42.4
(0.3) 		51
(3) 		40.2
(-0.4) 		32.3
(-2.9) 		38.6
(-0.9) 		32.1
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176948_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18873
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.C NCBI
Target Description Y48G1C.C /REP_DB=WormBase Gene ID /WP=CE22175 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60698.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058269 NCBI Caenorhabditis elegans Y48G1C.6 (Y48G1C.6) mRNA, complete cds. 11/11 None
SNAP00000011479 ENSEMBL cdna:SNAP chromosome:CEL140:I:85052:86284:-1 11/11 None
GENEFINDER00000011497 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:85052:86284:-1 11/11 None
Y48G1C.6 ENSEMBL cdna:known chromosome:CEL140:I:85045:86284:-1 gene:Y48G1C.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:85051-86284(-) 79.32 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.6
Entrez Gene 171597 Entrez gene
SwissProt Q9N3P2 EMBL-EBI
WormBase CE22175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490670 Y48G1C.6 [Caenorhabditis elegans] gb|AAK29891.1| Hypothetical protein Y48G1C.6 [Caenorhabditis elegans] 1.0E-124
blast AAF39819 Hypothetical protein F45D11.6 [Caenorhabditis elegans] ref|NP_493879.2| F45D11.6 [Caenorhabditis elegans] 3.0E-35
blast NP_503720 W02H5.4 [Caenorhabditis elegans] ref|NP_503721.1| W02H5.3 [Caenorhabditis elegans] gb|AAF60381.2| Hypothetical protein W02H5.4 [Caenorhabditis elegans] gb|AAF60383.2| Hypothetical protein W02H5.3 [Caenorhabditis elegans] 1.0E-26
Protein Domains
Database ID Description E-Value
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 0.00600000005215406
Sequence
Target Sequence 
>C. ELEGANS:176948_S_AT
aacattcaacagtggatcgcccagaaagctgaaatcgagaagcagttagaagacaacggc
tcaactgcaacaaagcgactttcgggaggtggaagacctttaaagtatgacgacgttgat
aaggaattgattaaatgggttcacgatcagcgtaaggagaaacaacgagtcaccagaaga
atcatcggtgaaacggcaaagaaaatcagtcagaactcggatttcaaggcatcccgcgga
tggttggacaaattcatgtgccgacacaatttgagtactcgacgagcaagaacggaaccc
ggtgatttaatgcagacactggttgatattcttctcagacaaactagttcggatgatgga
gaggaggatccgatgatcagcttcatcaaaagttgtatcccatctggagaagatcctctg
gagggggaggatcaagcagcaagtagttcggtgcaagttcctaaagttctggcggaggaa
aacggccacgaatcagattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTCAACAGTGGATCGCCCAGA 391 137 154 Antisense
GAAGACAACGGCTCAACTGCAACAA 605 339 202 Antisense
AACTCGGATTTCAAGGCATCCCGCG 533 141 367 Antisense
GCATCCCGCGGATGGTTGGACAAAT 454 305 382 Antisense
GTTGGACAAATTCATGTGCCGACAC 51 437 396 Antisense
GGAACCCGGTGATTTAATGCAGACA 595 529 447 Antisense
GCAGACACTGGTTGATATTCTTCTC 383 313 465 Antisense
GGAGGATCCGATGATCAGCTTCATC 69 517 516 Antisense
GTATCCCATCTGGAGAAGATCCTCT 120 455 548 Antisense
GTTCGGTGCAAGTTCCTAAAGTTCT 318 415 599 Antisense
GGAAAACGGCCACGAATCAGATTCT 692 527 630 Antisense
Sequence Source Affymetrix Proprietary Database