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[176946_at]

Description Y48G1C.D /REP_DB=WormBase Gene ID /WP=CE25320 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60699.1
Cluster 6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 8.9
(-1.3)
A 		23.2
(3)
A 		3.2
(-3)
A 		11.1
(-0.6)
A 		20
B 22.6
(-1.4)
A 		57.9
(3)
A 		35.4
(0.2)
A 		9.8
(-3)
A 		48
C 20.9
(-2.2)
A 		44.3
(-0.1)
A 		12.1
(-3)
A 		79.4
(3)
A 		67
avr 17.5
(-2.9) 		41.8
(3) 		16.9
(-3) 		33.4
(1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 40.8
(1.9)
A 		11.9
(-2.3)
A 		7
(-3)
A 		33.1
(0.7)
A 		47.2
(2.8)
A 		48.8
(3)
A 		42
B 23.9
(-0.7)
A 		14.8
(-1.7)
A 		2.8
(-3)
A 		44.6
(1.6)
A 		47.1
(1.9)
A 		57.3
(3)
A 		55
C 24.9
(1.1)
A 		17.3
(-0.4)
A 		21.8
(0.5)
A 		4.9
(-3)
A 		31.5
(2.5)
A 		33.9
(3)
A 		29
avr 29.9
(0.2) 		14.7
(-2.3) 		10.5
(-3) 		27.5
(-0.2) 		41.9
(2.2) 		46.7
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.3
(0.6)
A 		5
(3)
A 		0.8
(-3)
A 		1.6
(-1.9)
A 		4
B 7.2
(-0.5)
A 		14.3
(3)
A 		8.2
(-0)
A 		2.1
(-3)
A 		12
C 6.9
(-1.2)
A 		12.7
(2.5)
A 		4.2
(-3)
A 		13.4
(3)
A 		9
avr 5.8
(-1.7) 		10.7
(3) 		4.4
(-3) 		5.7
(-1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.5
(-0.2)
A 		4.2
(-1.7)
A 		1.5
(-3)
A 		8.4
(0.2)
A 		14.3
(3)
A 		11.9
(1.9)
A 		13
B 8.3
(-0.8)
A 		4.9
(-1.8)
A 		0.7
(-3)
A 		11.8
(0.2)
A 		19.2
(2.4)
A 		21.4
(3)
A 		21
C 9.2
(1.8)
A 		5.3
(-0.5)
A 		5.6
(-0.3)
A 		1
(-3)
A 		10.2
(2.4)
A 		11.3
(3)
A 		10
avr 8.3
(-0.2) 		4.8
(-1.9) 		2.6
(-3) 		7.1
(-0.8) 		14.6
(2.9) 		14.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18863
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.D NCBI
Target Description Y48G1C.D /REP_DB=WormBase Gene ID /WP=CE25320 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60699.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058267(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058267 NCBI Caenorhabditis elegans Y48G1C.5 (Y48G1C.5) mRNA, complete cds. 9/11 A 
SNAP00000011474 ENSEMBL cdna:SNAP chromosome:CEL140:I:55337:64021:-1 9/11 None
GENEFINDER00000011499 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:55722:64021:-1 9/11 None
Y48G1C.5 ENSEMBL cdna:known chromosome:CEL140:I:55316:64021:-1 gene:Y48G1C.5 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:56058-61920(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.5
Entrez Gene 171595 Entrez gene
SwissProt Q9BL78 EMBL-EBI
WormBase CE37433 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490668 Y48G1C.5 [Caenorhabditis elegans] gb|AAK29895.3| Hypothetical protein Y48G1C.5 [Caenorhabditis elegans] 0.0
blast AAB66199 Hypothetical protein K09F6.3 [Caenorhabditis elegans] ref|NP_494221.2| K09F6.3 [Caenorhabditis elegans] 4.0E-43
blast CAE58057 Hypothetical protein CBG01136 [Caenorhabditis briggsae] 5.0E-42
blast AAB66199 Hypothetical protein K09F6.3 [Caenorhabditis elegans] ref|NP_494221.2| K09F6.3 [Caenorhabditis elegans] 4.0E-41
blast CAE58057 Hypothetical protein CBG01136 [Caenorhabditis briggsae] 3.0E-38
blast AAB66199 Hypothetical protein K09F6.3 [Caenorhabditis elegans] ref|NP_494221.2| K09F6.3 [Caenorhabditis elegans] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.3E-8
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.2E-30
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.3E-8
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.2E-30
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.2E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490668.3 2 512-534,836-853
Y48G1C.5 2 512-534,836-853
SNAP00000011474 3 7-29,799-821,1123-1140
GENEFINDER00000011499 3 7-29,834-856,1159-1178
Sequence
Target Sequence 
>C. ELEGANS:176946_AT
tcccaccgccagatcttggaaattctgaaaagaatggtccaccaccacaccagggagaat
catcacatgttgttgaattggataacggcttgaagtttgtgttgatgcctgctccgcagt
tgcctgttgataagaaaagctccgatattttggcgattgccgcattttgggagtcagtga
agctgaataaaccaagcacaattgtgatgttgtgcgatttcgcggaaatagatcacttta
ttggagctaataaggtgaactgtgataggtactttcccactgaactcgacgaaaaactaa
ttttggcggacttaacaatcacttgcacgaagagtatctcgaagcctttgttgaagacta
gacaattgttgctaacatttggaaagaagcgtactcaagaggtgactcattaccagtata
ccggatggccggagcatatgggaccgaaagatgccgaggagattaggtatttgttgaaac
tagtgacagacagcgagagaccggtttttgtcgtatgcaatactggtggtggacgatcgg
cagcgtttgttcgtgagttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCACCGCCAGATCTTGGAAATTC 651 597 1841 Antisense
CCACCACCACACCAGGGAGAATCAT 554 273 1879 Antisense
TGCTCCGCAGTTGCCTGTTGATAAG 435 581 1950 Antisense
GCTCCGATATTTTGGCGATTGCCGC 166 299 1979 Antisense
GCGATTGCCGCATTTTGGGAGTCAG 545 291 1993 Antisense
TGATAGGTACTTTCCCACTGAACTC 637 563 2103 Antisense
GGCGGACTTAACAATCACTTGCACG 257 541 2145 Antisense
GAGGTGACTCATTACCAGTATACCG 320 401 2239 Antisense
CCGGATGGCCGGAGCATATGGGACC 564 265 2261 Antisense
GAGAGACCGGTTTTTGTCGTATGCA 75 395 2335 Antisense
CGGCAGCGTTTGTTCGTGAGTTTTT 677 241 2378 Antisense
Sequence Source Affymetrix Proprietary Database