[Home] | [Total List]

[176945_at]

Description Y73E7A.H /REP_DB=WormBase Gene ID /WP=CE26418 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23389.1
Cluster 6grp_total > 18      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 19.6
(-1.6)
A 		3.1
(-3)
A 		23.9
(-1.3)
A 		76.1
(3)
P 		73
B 24.2
(2.2)
A 		27.4
(3)
A 		3.8
(-3)
A 		24.6
(2.3)
A 		24
C 20.2
(-1.2)
A 		6.1
(-2.8)
A 		4.3
(-3)
A 		57.2
(3)
P 		53
avr 21.3
(-1.5) 		12.2
(-2.8) 		10.7
(-3) 		52.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 49.1
(3)
M 		40.6
(1.8)
A 		28.4
(0)
P 		9.2
(-2.7)
A 		13.9
(-2.1)
A 		7.4
(-3)
A 		42
B 27.1
(-0.6)
A 		16.5
(-3)
A 		22
(-1.8)
A 		38.6
(1.9)
A 		23.2
(-1.5)
A 		43.4
(3)
P 		27
C 23.6
(0.8)
A 		16.5
(-0.8)
A 		6
(-3)
A 		25.8
(1.2)
A 		34
(3)
A 		16.6
(-0.7)
A 		28
avr 33.3
(3) 		24.5
(-0.6) 		18.8
(-3) 		24.5
(-0.6) 		23.7
(-1) 		22.5
(-1.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.1
(0.7)
A 		0.7
(-3)
A 		6.3
(0.2)
A 		11.1
(3)
P 		10
B 7.7
(3)
A 		6.8
(2.2)
A 		0.9
(-3)
A 		5.2
(0.8)
A 		7
C 6.7
(0.8)
A 		1.8
(-2.8)
A 		1.5
(-3)
A 		9.7
(3)
P 		8
avr 7.2
(1.4) 		3.1
(-2.8) 		2.9
(-3) 		8.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.1
(0.5)
M 		14.4
(3)
A 		6.2
(-0.9)
P 		2.3
(-2.8)
A 		4.2
(-1.9)
A 		1.8
(-3)
A 		13
B 9.4
(-0.7)
A 		5.5
(-2.9)
A 		5.3
(-3)
A 		10.2
(-0.3)
A 		9.4
(-0.7)
A 		16.2
(3)
P 		11
C 8.7
(1.5)
A 		5
(-0.8)
A 		1.5
(-3)
A 		5.2
(-0.7)
A 		11
(3)
A 		5.6
(-0.4)
A 		10
avr 9.1
(3) 		8.3
(2) 		4.3
(-3) 		5.9
(-1) 		8.2
(1.9) 		7.9
(1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18678
Sequence Type Exemplar sequence
Representative Public ID Y73E7A.H NCBI
Target Description Y73E7A.H /REP_DB=WormBase Gene ID /WP=CE26418 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23389.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026658 NCBI Caenorhabditis elegans Y73E7A.9 (Y73E7A.9) mRNA, complete cds. 11/11 None
SNAP00000005639 ENSEMBL cdna:SNAP chromosome:CEL140:I:1601841:1627915:1 11/11 None
GENEFINDER00000005642 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1612762:1619944:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1610390-1619944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565128 Entrez gene
SwissProt Q4W5Q8 EMBL-EBI
WormBase CE38757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55898 Hypothetical protein Y73E7A.9 [Caenorhabditis elegans] ref|NP_001021829.1| Y73E7A.9 [Caenorhabditis elegans] 0.0
blast AAG23388 Hypothetical protein Y73E7A.2 [Caenorhabditis elegans] ref|NP_490870.2| Y73E7A.2 [Caenorhabditis elegans] 1.0E-176
blast CAE74429 Hypothetical protein CBG22162 [Caenorhabditis briggsae] 1.0E-111
blast CAE74429 Hypothetical protein CBG22162 [Caenorhabditis briggsae] 1.0E-106
blast CAE74429 Hypothetical protein CBG22162 [Caenorhabditis briggsae] 7.0E-93
blast XP_796372 PREDICTED: similar to CG5124-PA [Strongylocentrotus purpuratus] 9.0E-62
blast AAH60468 MGC68614 protein [Xenopus laevis] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.6E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.4E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0089
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.6E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.4E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0089
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005642 1 217-239
Sequence
Target Sequence 
>C. ELEGANS:176945_AT
gcggaaactcgaaagctttgctcagactgatcaaaagcttcacaactatggaacatatcg
gattggcgagaaaatgtgtgcaaaagtttaaagaatggtacccaaatgatacggctattg
agaaaatggaagaggatgttgaggcgcttactccaaacgaccgcccggaacttgttgctc
cagaaggtgttgtagattatcaggagagatatggtggaagtacaaatcatcagacagata
ttaaagaagcaaatttttttggttcaagagatcaatatattatcgccggttctgactgcg
gtcatatgtacatctggaatcgcgatacgtcaaaaattcaaggaatcttcgaagcggacg
atcatattctcaatatctgtcaaccacatcctgatcaatttatgattgccacggcgggaa
tcgatgacgatattctcctgtggcaaccgattttagaacgtcccgatgcttttttgagcc
gtcgagtcgaggatccttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGAAACTCGAAAGCTTTGCTCAG 208 293 1142 Antisense
GGATGTTGAGGCGCTTACTCCAAAC 26 511 1275 Antisense
TATTATCGCCGGTTCTGACTGCGGT 79 661 1419 Antisense
TGACTGCGGTCATATGTACATCTGG 600 569 1434 Antisense
GTACATCTGGAATCGCGATACGTCA 638 459 1449 Antisense
CTGTCAACCACATCCTGATCAATTT 584 239 1518 Antisense
TTGCCACGGCGGGAATCGATGACGA 190 701 1547 Antisense
GATGACGATATTCTCCTGTGGCAAC 290 411 1564 Antisense
GCAACCGATTTTAGAACGTCCCGAT 60 321 1584 Antisense
TCCCGATGCTTTTTTGAGCCGTCGA 170 595 1602 Antisense
GAGCCGTCGAGTCGAGGATCCTTAT 507 385 1617 Antisense
Sequence Source Affymetrix Proprietary Database