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[176944_at]

Description Y24D9A.C /REP_DB=WormBase Gene ID /WP=CE21458 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60464.1
Cluster 6grp_total > 70      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 50.8
(1.8)
A 		9.9
(-2.7)
A 		61.5
(3)
A 		6.9
(-3)
A 		55
B 53.1
(0.1)
A 		16
(-3)
A 		87.8
(3)
A 		45.1
(-0.6)
A 		72
C 4.7
(-3)
A 		8.1
(-2.8)
A 		11.3
(-2.6)
A 		101
(3)
A 		96
avr 36.2
(0.5) 		11.3
(-3) 		53.5
(3) 		51
(2.6) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 7.1
(-3)
A 		40
(3)
A 		39.7
(2.9)
A 		23.3
(-0)
A 		14.3
(-1.7)
A 		18.2
(-1)
A 		33
B 12
(0.7)
A 		5.2
(-1.8)
A 		2.1
(-3)
A 		10.1
(0)
A 		4.3
(-2.2)
A 		18
(3)
A 		16
C 8.5
(-2.1)
A 		10.6
(-1.8)
A 		9.2
(-2)
A 		42.9
(3)
A 		2.4
(-3)
A 		3
(-2.9)
A 		41
avr 9.2
(-2.3) 		18.6
(0.8) 		17
(0.3) 		25.4
(3) 		7
(-3) 		13.1
(-1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.5
(3)
A 		2.2
(-2.6)
A 		16.1
(2.2)
A 		1
(-3)
A 		18
B 16.9
(1.7)
A 		4
(-3)
A 		20.3
(3)
A 		9.6
(-0.9)
A 		16
C 1.5
(-3)
A 		2.3
(-2.7)
A 		3.9
(-2.1)
A 		17
(3)
A 		16
avr 12.3
(2.4) 		2.8
(-3) 		13.4
(3) 		9.2
(0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.3
(-3)
A 		14.2
(3)
A 		8.7
(0.4)
A 		5.9
(-0.9)
A 		4.3
(-1.6)
A 		4.4
(-1.6)
A 		13
B 4.2
(0.6)
A 		1.7
(-1.8)
A 		0.5
(-3)
A 		2.7
(-0.9)
A 		1.7
(-1.8)
A 		6.7
(3)
A 		6
C 3.1
(-1.2)
A 		3.2
(-1.2)
A 		2.3
(-1.8)
A 		8.6
(3)
A 		0.8
(-3)
A 		1
(-2.8)
A 		8
avr 2.9
(-2.1) 		6.4
(3) 		3.8
(-0.8) 		5.7
(2) 		2.3
(-3) 		4
(-0.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19361
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.C NCBI
Target Description Y24D9A.C /REP_DB=WormBase Gene ID /WP=CE21458 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60464.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068155 NCBI Caenorhabditis elegans Y24D9A.5 (Y24D9A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000027696 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4398641:4399743:-1 10/11 None
Y24D9A.5 ENSEMBL cdna:known chromosome:CEL140:IV:4398597:4399743:-1 gene:Y24D9A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4398602-4399749(-) 90.58 100.0
Public Domain and Genome References
Gene Title
Ensembl Y24D9A.5
Entrez Gene 189530 Entrez gene
SwissProt Q9N558 EMBL-EBI
WormBase CE21458 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60464 Hypothetical protein Y24D9A.5 [Caenorhabditis elegans] ref|NP_500556.1| Y24D9A.5 [Caenorhabditis elegans] 4.0E-84
blast AAF60464 Hypothetical protein Y24D9A.5 [Caenorhabditis elegans] ref|NP_500556.1| Y24D9A.5 [Caenorhabditis elegans] 6.0E-76
Sequence
Target Sequence 
>C. ELEGANS:176944_AT
tcatcatacaatactcttttcgaaatttgtctttctcggctgtgcaatatgttgggggat
ttcgttggaaatttttttagcaaacttgtccaagaagtggacggagcttacgacttgatt
ttgtggcctttcggaggaaaatcagtgttttatcgctttacaaatttaatccagaaaaaa
tccttctctgttcgctcttcgaaaagaccaggtatcctccagccattcaagaatgcaaaa
tctctcttcaaagaaggggagggaggggagggaaaccctacaatcagaaaaagaatgtca
gaatgcaacctatgggttgcaccacatacacataaccaaacacagcagcagacgacggcg
aaaacgacagaaaaccagtccgcgagtgcgcaagccaccgccaccgccgccgtctcctcc
ttcgcgcacctaactgattgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCATACAATACTCTTTTCGAAA 457 621 379 Antisense
TTGTCTTTCTCGGCTGTGCAATATG 318 705 405 Antisense
TGGACGGAGCTTACGACTTGATTTT 226 549 476 Antisense
ACTTGATTTTGTGGCCTTTCGGAGG 222 103 491 Antisense
AGAAAAAATCCTTCTCTGTTCGCTC 538 71 551 Antisense
CGAAAAGACCAGGTATCCTCCAGCC 522 251 578 Antisense
GTATCCTCCAGCCATTCAAGAATGC 489 453 590 Antisense
ATGGGTTGCACCACATACACATAAC 363 49 690 Antisense
CAAACACAGCAGCAGACGACGGCGA 642 189 715 Antisense
AGAAAACCAGTCCGCGAGTGCGCAA 72 73 747 Antisense
CCTTCGCGCACCTAACTGATTGTGA 678 269 797 Antisense
Sequence Source Affymetrix Proprietary Database