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[176943_s_at]

Description Y24D9A.E /REP_DB=WormBase Gene ID /WP=CE21460 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60466.1
Cluster 6grp_total > 10      4grp_total > 47      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 52.8
(3)
A 		3.1
(-3)
A 		39.1
(1.3)
A 		34.1
(0.7)
A 		50
B 33.4
(0.7)
A 		47.6
(3)
A 		10.2
(-3)
A 		16.5
(-2)
A 		37
C 79.1
(3)
A 		46.4
(-3)
A 		49.7
(-2.4)
A 		53.3
(-1.7)
A 		33
avr 55.1
(3) 		32.4
(-3) 		33
(-2.8) 		34.6
(-2.4) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 31.9
(-3)
A 		57.9
(3)
A 		49.5
(1.1)
A 		42.3
(-0.6)
A 		42.6
(-0.5)
A 		42.2
(-0.6)
A 		26
B 8.1
(-3)
A 		27.2
(0.6)
A 		21.4
(-0.5)
A 		18
(-1.1)
A 		39.7
(3)
A 		38.5
(2.8)
A 		32
C 24.9
(-2.9)
A 		74.9
(2.2)
P 		42.9
(-1)
A 		83
(3)
A 		23.5
(-3)
A 		32.2
(-2.1)
A 		60
avr 21.6
(-3) 		53.3
(3) 		37.9
(0.1) 		47.8
(2) 		35.3
(-0.4) 		37.6
(0) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.2
(3)
A 		0.7
(-3)
A 		10.2
(0.1)
A 		5
(-1.6)
A 		19
B 10.6
(2.2)
A 		11.8
(3)
A 		2.4
(-3)
A 		3.5
(-2.3)
A 		9
C 26.2
(3)
A 		13.3
(-1.5)
A 		17.3
(-0.1)
A 		9
(-3)
A 		17
avr 18.7
(3) 		8.6
(-1.7) 		10
(-1) 		5.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.9
(-3)
A 		20.6
(3)
A 		10.8
(-1)
A 		10.7
(-1)
A 		12.8
(-0.2)
A 		10.3
(-1.2)
A 		15
B 2.8
(-3)
A 		9.1
(-0.2)
A 		5.2
(-1.9)
A 		4.8
(-2.1)
A 		16.1
(3)
A 		14.4
(2.2)
A 		13
C 9.2
(-2.4)
A 		22.8
(3)
P 		10.9
(-1.7)
A 		16.7
(0.6)
A 		7.6
(-3)
A 		10.8
(-1.7)
A 		15
avr 6
(-3) 		17.5
(3) 		9
(-1.4) 		10.7
(-0.5) 		12.2
(0.2) 		11.8
(0) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176943_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19321
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.E NCBI
Target Description Y24D9A.E /REP_DB=WormBase Gene ID /WP=CE21460 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60466.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y24D9A.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y24D9A.E Y24D9A.E /REP_DB=WormBase Gene ID /WP=CE21460 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60466.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068150 9/11 Negative Strand Matching Probes A 
SNAP00000027686 9/11 Negative Strand Matching Probes None
GENEFINDER00000027695 9/11 Negative Strand Matching Probes None
SNAP00000022302 9/11 Negative Strand Matching Probes None
GENEFINDER00000022354 9/11 Negative Strand Matching Probes None
F55F10.1 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:67422-69737(+) 82.96 98.35
chrIV:4380089-4382404(-) 87.72 100.0
Sequence
Target Sequence 
>C. ELEGANS:176943_S_AT
tgatcaagagccttgtcctcttcacccttcttaactccatccagcttcttatagatcctt
tgaacaagcaggagcagttctgtaacatcggtttccgattcttcagcagcttcaaaagta
tcaatcttcttcgcccatctcggaatttcgtcgagaagcttcacaatttgaattttctca
gtttcaaagaatccagagaacagttgaagatccgtaagaagctcttgagaatctccattg
atctgagaaatccatgtggtgtaggaattgtagtctacaacgctgaacgtcgtcgagagc
tgatcattgcttcgtttcatatttccaatcagtgtcgacagcttttcagcccattttgta
agcttctgagcagtctcgtcggtttgcgagagcttcgagagtgggttccacaaaccatct
gcattcgctggaatcgcgacgagtcgtctcttgatggctccgatgagcacttgaacagtg
gaaatcaggcctccgatcttttcaactcgtcctttcacaatttcatgatcaataatccag
tcgcttctctgattctcactgataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCAAGAGCCTTGTCCTCTTCAC 164 565 1652 Antisense
GAGCAGTTCTGTAACATCGGTTTCC 565 389 1723 Antisense
GAGAGCTGATCATTGCTTCGTTTCA 342 395 1946 Antisense
GACAGCTTTTCAGCCCATTTTGTAA 302 369 1988 Antisense
TAAGCTTCTGAGCAGTCTCGTCGGT 236 633 2010 Antisense
GCGAGAGCTTCGAGAGTGGGTTCCA 198 287 2037 Antisense
TCCACAAACCATCTGCATTCGCTGG 61 589 2058 Antisense
CGCGACGAGTCGTCTCTTGATGGCT 709 255 2086 Antisense
CAACTCGTCCTTTCACAATTTCATG 503 187 2154 Antisense
TGATCAATAATCCAGTCGCTTCTCT 167 565 2177 Antisense
CGCTTCTCTGATTCTCACTGATAAT 697 253 2193 Antisense
Sequence Source Affymetrix Proprietary Database