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[176942_at]

Description Y24D9A.F /REP_DB=WormBase Gene ID /WP=CE21461 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60467.1
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 27      6grp_total > 53      4grp_total > 24      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6145
1 2 3 4 range
A 4702
(-3)
P 		7638.8
(-0.1)
P 		9865.7
(2)
P 		10847.4
(3)
P 		6145
B 5177.5
(-3)
P 		6843.6
(-0.8)
P 		9609.1
(3)
P 		9638.2
(3)
P 		4461
C 4796
(-3)
P 		6718.6
(-0.7)
P 		7626.9
(0.4)
P 		9723.3
(3)
P 		4927
avr 4891.8
(-3) 		7067
(-0.5) 		9033.9
(1.8) 		10069.6
(3) 		5178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7757
1 2 3 4 5 6 range
A 5542.2
(-2.1)
P 		7158.7
(0)
P 		9467.9
(3)
P 		8341.5
(1.5)
P 		4817.1
(-3)
P 		6199.3
(-1.2)
P 		4651
B 4817.8
(-2.5)
P 		5626.6
(-1.6)
P 		9428
(3)
P 		6649.1
(-0.3)
P 		5010.6
(-2.3)
P 		4426.9
(-3)
P 		5001
C 5123.5
(-3)
P 		5810.3
(-2.4)
P 		12183.8
(3)
P 		6665.1
(-1.7)
P 		6394.5
(-1.9)
P 		5344.9
(-2.8)
P 		7060
avr 5161.2
(-3) 		6198.5
(-1.8) 		10359.9
(3) 		7218.6
(-0.6) 		5407.4
(-2.7) 		5323.7
(-2.8) 		5199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1071
1 2 3 4 range
A 1712
(-2.2)
P 		1658.2
(-2.6)
P 		2579.1
(3)
P 		1587.9
(-3)
P 		991
B 1651
(-3)
P 		1690.2
(-2.6)
P 		2226.7
(3)
P 		2053.9
(1.2)
P 		576
C 1587.6
(-3)
P 		1931.6
(-1.1)
P 		2658.2
(3)
P 		1639.5
(-2.7)
P 		1071
avr 1650.2
(-3) 		1760
(-2.2) 		2488
(3) 		1760.4
(-2.2) 		838

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2079
1 2 3 4 5 6 range
A 1021.7
(-3)
P 		2546
(3)
P 		2061.9
(1.1)
P 		2115.6
(1.3)
P 		1453.6
(-1.3)
P 		1509.3
(-1.1)
P 		1524
B 1676.4
(-2.8)
P 		1872.9
(-0.9)
P 		2289.4
(3)
P 		1761.1
(-2)
P 		2035.7
(0.6)
P 		1650.8
(-3)
P 		639
C 1899.1
(-1.1)
P 		1772.9
(-1.5)
P 		3101
(3)
P 		1340.3
(-3)
P 		2069.2
(-0.5)
P 		1789.3
(-1.5)
P 		1761
avr 1532.4
(-3) 		2063.9
(0.4) 		2484.1
(3) 		1739
(-1.7) 		1852.8
(-1) 		1649.8
(-2.3) 		952
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19216
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.F NCBI
Target Description Y24D9A.F /REP_DB=WormBase Gene ID /WP=CE21461 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60467.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171314(11), NM_171315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171314 NCBI Caenorhabditis elegans Y24D9A.8a (Y24D9A.8) mRNA, complete cds. 11/11 None
NM_171315 NCBI Caenorhabditis elegans Y24D9A.8b (Y24D9A.8) mRNA, complete cds. 11/11 None
SNAP00000027687 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4386651:4388758:1 11/11 None
GENEFINDER00000027695 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4377107:4388758:1 11/11 None
Y24D9A.8a.3 ENSEMBL cdna:known chromosome:CEL140:IV:4386640:4388863:1 gene:Y24D9A.8 11/11 None
Y24D9A.8a.1 ENSEMBL cdna:known chromosome:CEL140:IV:4386644:4388871:1 gene:Y24D9A.8 11/11 None
Y24D9A.8a.2 ENSEMBL cdna:known chromosome:CEL140:IV:4386644:4389255:1 gene:Y24D9A.8 11/11 None
Y24D9A.8b ENSEMBL cdna:known chromosome:CEL140:IV:4387710:4388758:1 gene:Y24D9A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075676 7/11 Cross Hyb Matching Probes None
SNAP00000022302 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022354 7/11 Cross Hyb Matching Probes None
Y73B3A.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4377109-4388764(+) 94.8 100.0
Public Domain and Genome References
Ensembl Y24D9A.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17540 Hypothetical protein F55F10.1 [Caenorhabditis elegans] ref|NP_500551.2| F55F10.1 [Caenorhabditis elegans] 0.0
blast CAE58521 Hypothetical protein CBG01673 [Caenorhabditis briggsae] 0.0
blast AAK93861 Hypothetical protein Y24D9A.8a [Caenorhabditis elegans] ref|NP_741369.1| Y24D9A.8a [Caenorhabditis elegans] 1.0E-176
blast AAK93861 Hypothetical protein Y24D9A.8a [Caenorhabditis elegans] ref|NP_741369.1| Y24D9A.8a [Caenorhabditis elegans] 1.0E-172
blast CAE58522 Hypothetical protein CBG01674 [Caenorhabditis briggsae] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR001585 EMBL-EBI Transaldolase 1.0E-126
Pfam IPR001585 EMBL-EBI Transaldolase 4.9E-68
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.3E-5
Pfam IPR001585 EMBL-EBI Transaldolase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176942_AT
cacggaatccactgcaacatgacactgctcttcaactttgagcaagcagtcgcgtgtgcc
gagtcaggagtcaccctaatctcgccattcgtcggaagaatcatggattggttcgtgaag
aataccgatcagaaggcctacactcgaaaagacgatccaggagttgtcagtgttactcga
atctttaattattacaagaaatacgactataagacacaagtgatggctgcctcgttccgt
aatactgaagagatcaagggacttgttggatgtgatcttcttactatttctccggctctt
ctgaagcaacttgctgcggagacggaacttgctccagttgtgctctccacttctcatgcc
aagacactcgacctgccgaaagtgagcattgacgagaaggcgttcagatgggctctcaac
gaggacgccatggccaccgagaagctcgccgaaggaatccgcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGGAATCCACTGCAACATGACAC 245 199 4804 Antisense
AACATGACACTGCTCTTCAACTTTG 547 137 4819 Antisense
TTGAGCAAGCAGTCGCGTGTGCCGA 432 705 4841 Antisense
CCGAGTCAGGAGTCACCCTAATCTC 378 263 4862 Antisense
CTAATCTCGCCATTCGTCGGAAGAA 514 225 4879 Antisense
AATACCGATCAGAAGGCCTACACTC 252 173 4924 Antisense
AAGACACAAGTGATGGCTGCCTCGT 330 153 5014 Antisense
GATGTGATCTTCTTACTATTTCTCC 292 409 5072 Antisense
AGACGGAACTTGCTCCAGTTGTGCT 347 67 5123 Antisense
AGATGGGCTCTCAACGAGGACGCCA 13 69 5209 Antisense
AAGCTCGCCGAAGGAATCCGCAACT 273 149 5245 Antisense
Sequence Source Affymetrix Proprietary Database