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[176940_at]

Description Y42H9B.A /REP_DB=WormBase Gene ID /WP=CE25279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60565.1
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 9.5
(-3)
A 		9.2
(-3)
A 		32.8
(-1.7)
A 		115.1
(3)
A 		106
B 9.6
(-3)
A 		15.1
(-2.8)
A 		57.6
(-1.1)
A 		161.3
(3)
A 		152
C 13
(-3)
A 		33
(-2.1)
A 		87.4
(0.5)
A 		139.8
(3)
A 		127
avr 10.7
(-3) 		19.1
(-2.6) 		59.3
(-0.7) 		138.7
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1000
1 2 3 4 5 6 range
A 8.9
(-3)
A 		67.3
(-2.4)
A 		114.6
(-1.8)
A 		89
(-2.1)
A 		501
(2.5)
P 		550.4
(3)
P 		542
B 12.6
(-3)
A 		42.3
(-2.8)
A 		88.6
(-2.5)
A 		176.5
(-1.9)
M 		534.8
(0.6)
P 		885.8
(3)
P 		873
C 7.6
(-3)
A 		74.7
(-2.6)
A 		12.8
(-3)
A 		203.7
(-1.8)
A 		367.5
(-0.8)
P 		1007.8
(3)
P 		1000
avr 9.7
(-3) 		61.4
(-2.6) 		72
(-2.5) 		156.4
(-1.9) 		467.8
(0.4) 		814.7
(3) 		805
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.5
(-2.4)
A 		2
(-3)
A 		8.6
(-0.3)
A 		16.8
(3)
A 		15
B 3.1
(-3)
A 		3.7
(-2.9)
A 		13.3
(-1)
A 		34.4
(3)
A 		31
C 4.3
(-3)
A 		9.5
(-1.8)
A 		30.4
(3)
A 		23.6
(1.4)
A 		26
avr 3.6
(-3) 		5.1
(-2.6) 		17.4
(0.9) 		24.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 1.6
(-3)
A 		23.9
(-2.1)
A 		25
(-2.1)
A 		22.6
(-2.2)
A 		151.2
(3)
P 		134
(2.3)
P 		150
B 4.4
(-3)
A 		14.1
(-2.8)
A 		21.5
(-2.7)
A 		46.7
(-2.2)
M 		217.3
(0.9)
P 		330.3
(3)
P 		326
C 2.8
(-3)
A 		22.8
(-2.6)
A 		3.3
(-3)
A 		41
(-2.3)
A 		118.9
(-0.9)
P 		337.4
(3)
P 		335
avr 2.9
(-3) 		20.3
(-2.6) 		16.6
(-2.7) 		36.8
(-2.2) 		162.5
(0.6) 		267.2
(3) 		264
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19087
Sequence Type Exemplar sequence
Representative Public ID Y42H9B.A NCBI
Target Description Y42H9B.A /REP_DB=WormBase Gene ID /WP=CE25279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60565.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068939 NCBI Caenorhabditis elegans Y42H9B.3 (Y42H9B.3) mRNA, complete cds. 11/11 None
SNAP00000008109 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8011275:8012409:-1 11/11 None
GENEFINDER00000008112 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8011275:8012409:-1 11/11 None
Y42H9B.3 ENSEMBL cdna:known chromosome:CEL140:IV:8011275:8012409:-1 gene:Y42H9B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8011280-8012415(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42H9B.3
Entrez Gene 189844 Entrez gene
SwissProt Q9N3X7 EMBL-EBI
WormBase CE25279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60565 Hypothetical protein Y42H9B.3 [Caenorhabditis elegans] ref|NP_501340.1| Y42H9B.3 [Caenorhabditis elegans] 1.0E-136
blast CAE70934 Hypothetical protein CBG17737 [Caenorhabditis briggsae] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:176940_AT
gtacatcttctatcacaacagttttcaacggattgagtccttttcgttcaaaatcaaaaa
acgaagaatttgacgaacagaaggcaccgtcgatgcgtatttcagaggatgtagcgagta
ttgtgattggagaaaataacagtgaagtggaggaagctgtcattgatgaagttccagaaa
taaaaaagcgagcatgttgtattgagtgtagagagaaagaaattcgacaagaacttgatc
ttgaatctcatcagtatgcaaacttgcaatcacttcagaaaccacaggatccatatgtat
tcttgatgacatcaatgcttacaaatctccagaaagaggatggcgggcgacaagttgtga
aggttcaacaaaaaatcgaaaaagttctacgattgaagccacgtgaaccattcaacgttg
agcaaaagctcgtttttgatcggcaaatttcaacttttgcttctgacgtcacaattcgtc
ttcgtgcagtcagcgatgcggctcctgagacatatcgtgatgtttcagccagattctgtg
aagctcttcatcctggaactccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATCTTCTATCACAACAGTTTT 444 459 281 Antisense
CAACGGATTGAGTCCTTTTCGTTCA 559 187 306 Antisense
GAAGGCACCGTCGATGCGTATTTCA 675 331 360 Antisense
AACTTGCAATCACTTCAGAAACCAC 293 139 541 Antisense
GACATCAATGCTTACAAATCTCCAG 609 369 588 Antisense
GAGGATGGCGGGCGACAAGTTGTGA 91 403 616 Antisense
GAAGCCACGTGAACCATTCAACGTT 263 345 675 Antisense
CAACTTTTGCTTCTGACGTCACAAT 151 187 731 Antisense
ATGCGGCTCCTGAGACATATCGTGA 7 43 776 Antisense
GTGATGTTTCAGCCAGATTCTGTGA 609 483 797 Antisense
GCTCTTCATCCTGGAACTCCAAACT 224 301 823 Antisense
Sequence Source Affymetrix Proprietary Database