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[176938_at]

Description Y48G9A.B /REP_DB=WormBase Gene ID /WP=CE25323 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60708.1
Cluster 6grp_total > 70      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 14.4
(-1.6)
A 		46.8
(3)
A 		8.8
(-2.4)
A 		4.6
(-3)
A 		42
B 34.1
(3)
A 		6.4
(-2.8)
A 		27
(1.5)
A 		5.5
(-3)
A 		29
C 31
(-2.5)
A 		35.8
(-1.8)
A 		27.2
(-3)
A 		70.5
(3)
A 		43
avr 26.5
(0.8) 		29.7
(3) 		21
(-3) 		26.9
(1.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.4
(-2.8)
A 		3.5
(-3)
A 		10
(-1.7)
A 		10.3
(-1.6)
A 		33.4
(3)
A 		5.9
(-2.5)
A 		30
B 38.1
(3)
A 		26
(0.9)
A 		3.1
(-3)
A 		32.7
(2.1)
A 		4
(-2.8)
A 		14.6
(-1)
A 		35
C 4.4
(-3)
A 		5.1
(-2.9)
A 		42.3
(3)
A 		31
(1.2)
A 		13.6
(-1.5)
A 		15.5
(-1.2)
A 		38
avr 15.6
(-1.1) 		11.5
(-3) 		18.5
(0.2) 		24.7
(3) 		17
(-0.5) 		12
(-2.8) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(-0.1)
A 		10.2
(3)
A 		2.3
(-2)
A 		0.7
(-3)
A 		10
B 10.9
(3)
A 		1.6
(-2.8)
A 		6.2
(0.1)
A 		1.2
(-3)
A 		10
C 10.2
(-1.3)
A 		10.3
(-1)
A 		9.5
(-3)
A 		11.9
(3)
A 		2
avr 8.8
(3) 		7.4
(1) 		6
(-1) 		4.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.2
(-2.7)
A 		2.2
(-2.1)
A 		2.6
(-1.8)
A 		10.1
(3)
A 		1.4
(-2.6)
A 		9
B 13.3
(3)
A 		8.7
(0.8)
A 		0.8
(-3)
A 		8.7
(0.8)
A 		1.6
(-2.6)
A 		5.4
(-0.8)
A 		13
C 1.6
(-3)
A 		1.6
(-3)
A 		10.8
(3)
A 		6.2
(-0)
A 		4.4
(-1.2)
A 		5.2
(-0.7)
A 		9
avr 5.2
(1.2) 		3.8
(-3) 		4.6
(-0.6) 		5.8
(3) 		5.4
(1.8) 		4
(-2.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18976
Sequence Type Exemplar sequence
Representative Public ID Y48G9A.B NCBI
Target Description Y48G9A.B /REP_DB=WormBase Gene ID /WP=CE25323 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60708.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065106 NCBI Caenorhabditis elegans Y48G9A.12 (Y48G9A.12) mRNA, complete cds. 11/11 None
Y48G9A.12 ENSEMBL cdna:known chromosome:CEL140:III:2158610:2160330:-1 gene:Y48G9A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2158609-2160330(-) 94.25 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G9A.12
Entrez Gene 190057 Entrez gene
SwissProt Q9N3M4 EMBL-EBI
WormBase CE25323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29912 Hypothetical protein Y48G9A.12 [Caenorhabditis elegans] ref|NP_497507.1| Y48G9A.12 [Caenorhabditis elegans] 1.0E-141
Sequence
Target Sequence 
>C. ELEGANS:176938_AT
aaattctcaattccttcgacatcacaagcacctgcagctggcacattccattacaatcac
acacacactaggtttctcgccaagatgaccggctggcagtgtgtggggtcacccgcagag
acacagaacaaaatgacgtcatctgctggggtcagggacttgacttttcatgtgaaaatc
gattttagtctcaaattttgtctggaaatctcgcgaaaaatggaatttcagctgaaattt
cagatcaaagggctcagaaatagccaaaaaaatgcttttttcgcttccaggcaaactttt
tctggagattttggactgaaattgcacaaattctgcaattttccacgagttttcttgctc
tctgagagctttttggagcgatattcagtggttttttcactggaaaatcacaattttcga
cacattttactcgaaaaagcaatcttcgcaaaatgtgcatttttgcccaaaaatctctca
gaatccccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCTCAATTCCTTCGACATCAC 56 117 253 Antisense
GGCACATTCCATTACAATCACACAC 381 535 292 Antisense
ATCACACACACACTAGGTTTCTCGC 449 27 308 Antisense
AGGTTTCTCGCCAAGATGACCGGCT 598 55 322 Antisense
GACCGGCTGGCAGTGTGTGGGGTCA 352 381 339 Antisense
GGTCACCCGCAGAGACACAGAACAA 540 503 359 Antisense
ACGTCATCTGCTGGGGTCAGGGACT 459 93 388 Antisense
ATTCTGCAATTTTCCACGAGTTTTC 370 9 582 Antisense
CGAGTTTTCTTGCTCTCTGAGAGCT 230 249 598 Antisense
GGAGCGATATTCAGTGGTTTTTTCA 596 521 627 Antisense
CAAAAATCTCTCAGAATCCCCACAA 482 191 720 Antisense
Sequence Source Affymetrix Proprietary Database