[Home] | [Total List]

[176937_at]

Description Y34D9A.C /REP_DB=WormBase Gene ID /WP=CE21525 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59433.1
Cluster 6grp_total > 48      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 90.5
(0.1)
A 		32.2
(-3)
A 		73.4
(-0.8)
A 		146.1
(3)
M 		114
B 63.5
(-0.7)
A 		48.6
(-1.7)
A 		30.4
(-3)
A 		116.3
(3)
A 		86
C 65.9
(-1.4)
A 		71.3
(-1.2)
A 		33.6
(-3)
A 		158.6
(3)
P 		125
avr 73.3
(-1.3) 		50.7
(-2.7) 		45.8
(-3) 		140.3
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 14.6
(-2)
A 		10
(-2.5)
A 		52.8
(2)
A 		5.2
(-3)
A 		42.7
(0.9)
A 		62.4
(3)
A 		57
B 90.3
(3)
A 		42.8
(-1.2)
A 		23.2
(-3)
A 		87.9
(2.8)
A 		53.3
(-0.3)
A 		29.4
(-2.4)
A 		67
C 51.4
(3)
A 		33.1
(0.6)
A 		14.6
(-1.8)
A 		30.5
(0.3)
A 		5.7
(-3)
A 		45.1
(2.2)
A 		46
avr 52.1
(3) 		28.6
(-3) 		30.2
(-2.6) 		41.2
(0.2) 		33.9
(-1.6) 		45.6
(1.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 33
(3)
A 		7
(-3)
A 		19.2
(-0.2)
A 		21.4
(0.3)
M 		26
B 20.2
(1.4)
A 		12
(-1.3)
A 		7.1
(-3)
A 		24.8
(3)
A 		18
C 21.8
(1)
A 		20.5
(0.5)
A 		11.7
(-3)
A 		26.7
(3)
P 		15
avr 25
(3) 		13.2
(-2.8) 		12.7
(-3) 		24.3
(2.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		3.6
(-2)
A 		11.5
(1.4)
A 		1.3
(-3)
A 		12.9
(2)
A 		15.2
(3)
A 		14
B 31.4
(3)
A 		14.2
(-1)
A 		5.6
(-3)
A 		23.3
(1.1)
A 		21.7
(0.7)
A 		11
(-1.7)
A 		26
C 19.1
(3)
A 		10.1
(-0.1)
A 		3.7
(-2.3)
A 		6.1
(-1.5)
A 		1.8
(-3)
A 		15.1
(1.6)
A 		17
avr 17.7
(3) 		9.3
(-1.7) 		6.9
(-3) 		10.2
(-1.2) 		12.1
(-0.1) 		13.8
(0.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18640
Sequence Type Exemplar sequence
Representative Public ID Y34D9A.C NCBI
Target Description Y34D9A.C /REP_DB=WormBase Gene ID /WP=CE21525 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59433.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058412 NCBI Caenorhabditis elegans Y34D9A.8 (Y34D9A.8) mRNA, complete cds. 11/11 None
SNAP00000009164 ENSEMBL cdna:SNAP chromosome:CEL140:I:1019921:1052164:-1 11/11 None
GENEFINDER00000009194 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1050926:1052164:-1 11/11 None
Y34D9A.8 ENSEMBL cdna:known chromosome:CEL140:I:1050926:1052164:-1 gene:Y34D9A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1050925-1052164(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34D9A.8
Entrez Gene 189589 Entrez gene
SwissProt Q9N455 EMBL-EBI
WormBase CE21525 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV68307 SPD-1 [Caenorhabditis elegans] ref|NP_490809.2| SPindle Defective family member (spd-1) [Caenorhabditis elegans] gb|AAT81176.1| Spindle defective protein 1 [Caenorhabditis elegans] 0.0
blast NP_490808 Y34D9A.1 [Caenorhabditis elegans] gb|AAK29884.1| Hypothetical protein Y34D9A.1 [Caenorhabditis elegans] 0.0
blast CAE74320 Hypothetical protein CBG22031 [Caenorhabditis briggsae] 0.0
blast NP_490813 Y34D9A.8 [Caenorhabditis elegans] gb|AAK29879.1| Hypothetical protein Y34D9A.8 [Caenorhabditis elegans] 2.0E-45
blast CAE74361 Hypothetical protein CBG22085 [Caenorhabditis briggsae] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR007145 EMBL-EBI MAP65/ASE1 1.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490813.1 1 65-87
Y34D9A.8 1 65-87
SNAP00000009164 1 67-89
GENEFINDER00000009194 1 65-87
Sequence
Target Sequence 
>C. ELEGANS:176937_AT
tcgcttctctcgaatattcttcaacaggagatcaccgattttccggagttattcgatatg
gggggcggagcgccgatggctcgtgagggagttgctcaaccacgacagacaaatgtgcag
gccaccgtagcggcggtgaaggagacaacgacgataaccgctgaatcttcaggcaccgtc
acaatccaatactcgcacattttcttcgcctttgtcgcgtttttcgttctctcggttgcc
gtagtcgctgtgattcgtcggcgatcacgacaaaaatccggatttcgaaatcgacgtggc
ggcgggcacgggggcccgagcatactgcaacaggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTTCTCTCGAATATTCTTCAAC 220 601 22 Antisense
GGAGATCACCGATTTTCCGGAGTTA 156 519 48 Antisense
ATATGGGGGGCGGAGCGCCGATGGC 620 21 77 Antisense
GCCGATGGCTCGTGAGGGAGTTGCT 702 283 93 Antisense
AGTTGCTCAACCACGACAGACAAAT 289 65 111 Antisense
AGACAAATGTGCAGGCCACCGTAGC 648 71 128 Antisense
ACGACGATAACCGCTGAATCTTCAG 482 91 169 Antisense
TTCAGGCACCGTCACAATCCAATAC 536 685 189 Antisense
AATCCAATACTCGCACATTTTCTTC 453 167 204 Antisense
CCGTAGTCGCTGTGATTCGTCGGCG 557 263 260 Antisense
GGCCCGAGCATACTGCAACAGGATT 218 543 334 Antisense
Sequence Source Affymetrix Proprietary Database