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[176935_s_at]

Description Y67D8C.K /REP_DB=WormBase Gene ID /WP=CE26235 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23379.1
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 77      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 91      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 253
(3)
P 		101.5
(-3)
P 		131.5
(-1.8)
P 		115
(-2.5)
P 		152
B 128.5
(1.8)
P 		136.3
(3)
P 		105.9
(-1.6)
P 		96.6
(-3)
P 		40
C 210.7
(2.2)
P 		101.6
(-2.9)
P 		227.6
(3)
P 		99.8
(-3)
P 		128
avr 197.4
(3) 		113.1
(-2.4) 		155
(0.3) 		103.8
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 150.4
(-2.8)
P 		147.6
(-3)
P 		178.5
(-0.5)
P 		175.1
(-0.8)
P 		150.5
(-2.8)
P 		222.5
(3)
P 		75
B 143.1
(-2.4)
P 		172.7
(-1.8)
P 		195
(-1.3)
P 		116.5
(-3)
P 		201.9
(-1.1)
P 		387.9
(3)
P 		271
C 194.4
(-1)
P 		144
(-2.4)
P 		122.7
(-3)
P 		257.9
(0.8)
P 		148.8
(-2.3)
P 		335.5
(3)
P 		213
avr 162.6
(-2.7) 		154.8
(-3) 		165.4
(-2.6) 		183.2
(-1.9) 		167.1
(-2.5) 		315.3
(3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 92.1
(3)
P 		22
(-2.6)
P 		34.4
(-1.6)
P 		16.8
(-3)
P 		75
B 41
(3)
P 		33.7
(0.9)
P 		24.5
(-1.9)
P 		20.6
(-3)
P 		20
C 69.7
(2.1)
P 		29.2
(-1.8)
P 		79.3
(3)
P 		16.8
(-3)
P 		63
avr 67.6
(3) 		28.3
(-1.8) 		46.1
(0.4) 		18.1
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 27.7
(-3)
P 		52.5
(2.6)
P 		38.9
(-0.5)
P 		44.4
(0.8)
P 		45.4
(1)
P 		54.2
(3)
P 		27
B 49.8
(-2)
P 		57.5
(-1.6)
P 		47.4
(-2.1)
P 		30.9
(-3)
P 		82
(-0.3)
P 		144.6
(3)
P 		114
C 72.1
(0)
P 		43.9
(-2.1)
P 		31.2
(-3)
P 		51.9
(-1.5)
P 		48.2
(-1.7)
P 		112.3
(3)
P 		81
avr 49.9
(-2) 		51.3
(-1.9) 		39.2
(-3) 		42.4
(-2.7) 		58.5
(-1.2) 		103.7
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176935_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19184
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.K NCBI
Target Description Y67D8C.K /REP_DB=WormBase Gene ID /WP=CE26235 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23379.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028386(11), NM_001028387(11), NM_067894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028386 NCBI Caenorhabditis elegans Y67D8C.3a (transposase) mRNA, complete cds. 11/11 None
NM_001028387 NCBI Caenorhabditis elegans Y67D8C.3b (transposase) mRNA, complete cds. 11/11 None
NM_067894 NCBI Caenorhabditis elegans T23E1.2 (T23E1.2) mRNA, complete cds. 11/11 A 
SNAP00000001612 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3055711:3061940:1 11/11 None
GENEFINDER00000001627 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3055711:3061940:1 11/11 None
SNAP00000009474 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3137085:3146719:1 11/11 None
GENEFINDER00000009486 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3137085:3146719:1 11/11 None
Y67D8C.3b.2 ENSEMBL cdna:known chromosome:CEL140:IV:3055711:3061940:1 gene:Y67D8C.3 11/11 None
Y67D8C.3a ENSEMBL cdna:known chromosome:CEL140:IV:3055711:3062030:1 gene:Y67D8C.3 11/11 None
Y67D8C.3b.1 ENSEMBL cdna:known chromosome:CEL140:IV:3056159:3061940:1 gene:Y67D8C.3 11/11 None
T23E1.2 ENSEMBL cdna:known chromosome:CEL140:IV:3141761:3146744:1 gene:T23E1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3055716-3061946(+) 100.0 100.0
chrIV:3140475-3146725(+) 84.47 84.47
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.3
T23E1.2
Entrez Gene 188795 Entrez gene
SwissProt O45204 EMBL-EBI
WormBase CE33837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23379 Hypothetical protein Y67D8C.3a [Caenorhabditis elegans] ref|NP_001023557.1| Y67D8C.3a [Caenorhabditis elegans] 0.0
blast AAP31423 Hypothetical protein Y67D8C.3b [Caenorhabditis elegans] ref|NP_001023558.1| Y67D8C.3b [Caenorhabditis elegans] 0.0
blast AAP13766 Hypothetical protein T23E1.2 [Caenorhabditis elegans] ref|NP_500295.2| T23E1.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176935_S_AT
atttctgcacttttagatcccagatatggctattcaccaatgattttctcagaagaagat
tgggaaaatgttgaaggaaagctattaaaagagatgagtacaacacatcaaaagaatctt
attgttcgaaaagaattacaacgatacagagaacttttagttaatcggccattatttgat
gaatcaaatactccaggaatgtggtggaatgatttacaagaagaattacaatttatgtat
aaaaaatggtttgaatattccggacttccagctgtatcgattgatggaaaacgatttttt
gcaaaagggggaaaactggctcatttgtttgctacacttgatgaggaattgcattttaag
gcaatgcttttggcacagagttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTGCACTTTTAGATCCCAGAT 211 17 1243 Antisense
GGCTATTCACCAATGATTTTCTCAG 170 539 1270 Antisense
GAGAACTTTTAGTTAATCGGCCATT 628 391 1391 Antisense
AATCGGCCATTATTTGATGAATCAA 482 169 1405 Antisense
GATGAATCAAATACTCCAGGAATGT 628 411 1420 Antisense
GGTTTGAATATTCCGGACTTCCAGC 259 505 1490 Antisense
GGACTTCCAGCTGTATCGATTGATG 204 525 1504 Antisense
GCAAAAGGGGGAAAACTGGCTCATT 359 285 1543 Antisense
ACTGGCTCATTTGTTTGCTACACTT 662 95 1557 Antisense
GTTTGCTACACTTGATGAGGAATTG 546 451 1569 Antisense
GCAATGCTTTTGGCACAGAGTTCTC 620 321 1603 Antisense
Sequence Source Affymetrix Proprietary Database