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[176934_at]

Description Y34D9A.J /REP_DB=WormBase Gene ID /WP=CE25237 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59440.1
Cluster 6grp_total > 27      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 6.4
(-3)
A 		20.9
(1.1)
A 		27.8
(3)
A 		13.7
(-1)
A 		21
B 46.7
(3)
A 		4
(-2.8)
A 		28.6
(0.5)
A 		2.7
(-3)
A 		44
C 1.6
(-3)
A 		36.7
(0.5)
A 		5.2
(-2.6)
A 		62.5
(3)
A 		61
avr 18.2
(-3) 		20.5
(-1.3) 		20.5
(-1.3) 		26.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.2
(3)
A 		26.4
(-3)
A 		38.6
(0.4)
A 		26.4
(-3)
A 		31.5
(-1.6)
A 		30.7
(-1.8)
A 		22
B 18.5
(-0.3)
A 		30.5
(3)
A 		10.1
(-2.6)
A 		8.5
(-3)
A 		17.4
(-0.6)
A 		29.7
(2.8)
P 		22
C 29.3
(2.8)
A 		30.5
(3)
A 		3.5
(-2.6)
A 		1.5
(-3)
A 		13
(-0.6)
A 		3.2
(-2.6)
A 		29
avr 32
(3) 		29.1
(2.1) 		17.4
(-1.4) 		12.1
(-3) 		20.6
(-0.4) 		21.2
(-0.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.3
(-2.7)
A 		4.5
(-0.2)
A 		7.3
(3)
A 		2
(-3)
A 		5
B 14.9
(3)
A 		1
(-2.8)
A 		6.6
(-0.5)
A 		0.6
(-3)
A 		14
C 0.5
(-3)
A 		10.5
(3)
A 		1.8
(-2.2)
A 		10.5
(3)
A 		10
avr 5.9
(3) 		5.3
(0.6) 		5.2
(0.2) 		4.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8.9
(1.7)
A 		9.4
(2.8)
A 		8.4
(0.6)
A 		6.7
(-3)
A 		9.5
(3)
A 		7.5
(-1.3)
A 		3
B 6.4
(-0.2)
A 		10.2
(2.4)
A 		2.5
(-2.8)
A 		2.2
(-3)
A 		7.1
(0.3)
A 		11.1
(3)
P 		9
C 10.9
(3)
A 		9.3
(2.1)
A 		0.9
(-2.7)
A 		0.3
(-3)
A 		4.2
(-0.8)
A 		1.1
(-2.5)
A 		11
avr 8.7
(2.2) 		9.6
(3) 		3.9
(-2.3) 		3.1
(-3) 		6.9
(0.5) 		6.6
(0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18636
Sequence Type Exemplar sequence
Representative Public ID Y34D9A.J NCBI
Target Description Y34D9A.J /REP_DB=WormBase Gene ID /WP=CE25237 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59440.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058410
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009197 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1034475:1049253:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058410 7/11 Cross Hyb Matching Probes None
Y34D9A.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1041485-1048188(+) 92.2 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021742 Y34D9A.3 [Caenorhabditis elegans] gb|AAX88819.1| Hypothetical protein Y34D9A.3 [Caenorhabditis elegans] 0.0
blast NP_490811 Y34D9A.7 [Caenorhabditis elegans] gb|AAK29880.3| Hypothetical protein Y34D9A.7 [Caenorhabditis elegans] 1.0E-172
blast CAE74322 Hypothetical protein CBG22033 [Caenorhabditis briggsae] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR006568 EMBL-EBI PSP, proline-rich 2.1E-27
Sequence
Target Sequence 
>C. ELEGANS:176934_AT
ttcatcgatttctctcccaaaaatatatatctccagaatatcgatttccaattttttttt
caaggttttttgtccaaaaatcgattttttctttccaaaatttttccaaattttttttcc
gaaaacatatttttccaaaaaaaaaaaacggataagaaaatcgattgccggaattttgtt
gaataccggcaaattcccaggagaatcaatttcggaattcatcggcaccccgatcttctc
ccgccgtgacgtcacgggtacgtggattgaggatactgtaccatcgctcgaagcgttttc
cgtcggcattgtgccattcgaggcgaaagaggaggagaagccacgtggcattttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATCGATTTCTCTCCCAAAAATA 566 687 1236 Antisense
ATCTCCAGAATATCGATTTCCAATT 162 33 1264 Antisense
GATTGCCGGAATTTTGTTGAATACC 47 435 1398 Antisense
GTTGAATACCGGCAAATTCCCAGGA 331 433 1413 Antisense
TCAATTTCGGAATTCATCGGCACCC 399 633 1441 Antisense
CCCGCCGTGACGTCACGGGTACGTG 287 257 1475 Antisense
TTGAGGATACTGTACCATCGCTCGA 150 707 1502 Antisense
TACCATCGCTCGAAGCGTTTTCCGT 77 651 1514 Antisense
TTTTCCGTCGGCATTGTGCCATTCG 428 675 1531 Antisense
GGCATTGTGCCATTCGAGGCGAAAG 329 537 1540 Antisense
GGAGAAGCCACGTGGCATTTTCAAA 179 519 1569 Antisense
Sequence Source Affymetrix Proprietary Database