[Home] | [Total List]

[176932_at]

Description Y34D9A.I /REP_DB=WormBase Gene ID /WP=CE21532 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59439.1
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_high_8_8 > 41      6grp_highest_nonorm > 90      6grp_total > 69      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 236.1
(3)
P 		166.5
(-0.9)
P 		130.5
(-2.8)
P 		127.7
(-3)
P 		108
B 204.1
(3)
P 		158.2
(0)
P 		112
(-3)
M 		134.9
(-1.5)
P 		92
C 243
(3)
P 		165.1
(-0.7)
P 		142.6
(-1.8)
P 		117.5
(-3)
P 		126
avr 227.7
(3) 		163.3
(-0.8) 		128.4
(-2.9) 		126.7
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 132.7
(-0.9)
P 		135.4
(-0.8)
P 		84.7
(-3)
P 		179.8
(1.1)
P 		173.4
(0.9)
P 		222.9
(3)
P 		138
B 179.7
(1.3)
P 		134
(-1.1)
P 		98.2
(-3)
P 		138
(-0.9)
P 		141.5
(-0.7)
P 		212
(3)
P 		114
C 132.8
(-3)
P 		152
(-1.6)
P 		140.8
(-2.4)
P 		158.1
(-1.2)
P 		181.2
(0.4)
P 		217.1
(3)
P 		84
avr 148.4
(-0.8) 		140.5
(-1.2) 		107.9
(-3) 		158.6
(-0.2) 		165.4
(0.2) 		217.3
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 86
(3)
P 		36.1
(-1.4)
P 		34.1
(-1.6)
P 		18.7
(-3)
P 		67
B 65.1
(3)
P 		39.1
(-1)
P 		25.9
(-3)
M 		28.7
(-2.6)
P 		39
C 80.4
(3)
P 		47.5
(-0.3)
P 		49.7
(-0)
P 		19.8
(-3)
P 		61
avr 77.2
(3) 		40.9
(-1) 		36.6
(-1.4) 		22.4
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 24.5
(-2)
P 		48.2
(2)
P 		18.4
(-3)
P 		45.6
(1.5)
P 		52.3
(2.7)
P 		54.3
(3)
P 		36
B 62.5
(1.2)
P 		44.6
(-0.7)
P 		23.9
(-3)
P 		36.6
(-1.6)
P 		57.5
(0.7)
P 		79
(3)
P 		55
C 49.2
(-0.4)
P 		46.4
(-0.9)
P 		35.8
(-2.4)
P 		31.8
(-3)
P 		58.6
(0.9)
P 		72.7
(3)
P 		41
avr 45.4
(-0.3) 		46.4
(-0.1) 		26
(-3) 		38
(-1.3) 		56.1
(1.2) 		68.7
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18633
Sequence Type Exemplar sequence
Representative Public ID Y34D9A.I NCBI
Target Description Y34D9A.I /REP_DB=WormBase Gene ID /WP=CE21532 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59439.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026571 NCBI Caenorhabditis elegans Y34D9A.3 (Y34D9A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000009197 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1034475:1049253:1 11/11 None
Y34D9A.3a ENSEMBL cdna:known chromosome:CEL140:I:1034474:1040870:1 gene:Y34D9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1032509-1040765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34D9A.3
Entrez Gene 171684 Entrez gene
WormBase CE38565 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021742 Y34D9A.3 [Caenorhabditis elegans] gb|AAX88819.1| Hypothetical protein Y34D9A.3 [Caenorhabditis elegans] 0.0
blast NP_490811 Y34D9A.7 [Caenorhabditis elegans] gb|AAK29880.3| Hypothetical protein Y34D9A.7 [Caenorhabditis elegans] 1.0E-172
blast CAE74322 Hypothetical protein CBG22033 [Caenorhabditis briggsae] 2.0E-73
blast CAE74322 Hypothetical protein CBG22033 [Caenorhabditis briggsae] 1.0E-59
blast CAE74322 Hypothetical protein CBG22033 [Caenorhabditis briggsae] 8.0E-47
blast CAE74323 Hypothetical protein CBG22034 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR006568 EMBL-EBI PSP, proline-rich 2.1E-27
Sequence
Target Sequence 
>C. ELEGANS:176932_AT
aagcccaattcaacgacttatttcgtcaatttctctcaaaaacgattcccaactcgacat
gcacgtctccaatggaaattattgaggaaatttgcgaaaaaatccgaataaaatccaatt
ttcgccacttgccagacatttcattcttgaaacccaatcccgacacgattatcacacaaa
tttcggagattttcgacacgaaaatcgccaaaaacgacgaacgaatcgtcgaaatttgct
cgattttgttggaaaagctggcgccgcaacttcaagccttcggagatcgtggcaagaccc
cattttgtcaaattgtgaatattattgttgataaatatgtgaaaaattcggtggaacccg
tcaattttcaactttttcgggaagtttgtgagcgagctgtcgacggatttgcgatgatga
cagagcaatggaatttcctgtttctttccgcaaaaatcctgacgattttgaacttgacgc
ggcgggaagcgggcttattcgctgttttaatgagaaaaatcaataaaaatgagattcttc
tcacaaaactacgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCCAATTCAACGACTTATTTCG 246 149 2090 Antisense
TCGACATGCACGTCTCCAATGGAAA 252 601 2143 Antisense
CCACTTGCCAGACATTTCATTCTTG 574 275 2214 Antisense
TTCATTCTTGAAACCCAATCCCGAC 557 689 2229 Antisense
TGGAAAAGCTGGCGCCGCAACTTCA 524 545 2339 Antisense
GCAACTTCAAGCCTTCGGAGATCGT 521 319 2355 Antisense
TCGTGGCAAGACCCCATTTTGTCAA 485 605 2376 Antisense
ATGGAATTTCCTGTTTCTTTCCGCA 708 49 2517 Antisense
GACGATTTTGAACTTGACGCGGCGG 316 379 2550 Antisense
GGCGGGAAGCGGGCTTATTCGCTGT 357 539 2570 Antisense
AGATTCTTCTCACAAAACTACGCGG 63 49 2621 Antisense
Sequence Source Affymetrix Proprietary Database