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[176931_at]

Description Y67D8C.H /REP_DB=WormBase Gene ID /WP=CE22787 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23376.1
Cluster 6grp_total > 63      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.8
(-3)
A 		6.3
(3)
A 		5
(-0.1)
A 		3.8
(-3)
A 		3
B 4.9
(3)
A 		4.6
(2.2)
A 		4.4
(1.6)
A 		2.7
(-3)
A 		2
C 2.9
(-3)
A 		5
(-0.6)
A 		3.4
(-2.4)
A 		8.2
(3)
A 		5
avr 3.9
(-3) 		5.3
(3) 		4.3
(-1.3) 		4.9
(1.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4
(3)
A 		3
(-1.6)
A 		3.2
(-0.7)
A 		3.5
(0.7)
A 		3.2
(-0.7)
A 		2.7
(-3)
A 		1
B 2.3
(-2.2)
A 		2.7
(-1.1)
A 		4.2
(3)
A 		4
(2.5)
A 		2.4
(-1.9)
A 		2
(-3)
A 		2
C 2.7
(-3)
A 		2.8
(-2.8)
A 		5.8
(3)
A 		4.1
(-0.3)
A 		3.1
(-2.2)
A 		5.3
(2)
A 		3
avr 3
(-2.3) 		2.8
(-3) 		4.4
(3) 		3.9
(1.1) 		2.9
(-2.6) 		3.3
(-1.1) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.4
(3)
A 		1.4
(3)
A 		1.3
(2.3)
A 		0.6
(-3)
A 		1
B 1.6
(3)
A 		1.1
(0)
A 		1
(-0.6)
A 		0.6
(-3)
A 		1
C 1
(-3)
A 		1.4
(3)
A 		1.2
(0)
A 		1.4
(3)
A 		0
avr 1.3
(3) 		1.3
(3) 		1.2
(1.5) 		0.9
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.1
(3)
A 		0.7
(-3)
A 		0.9
(0)
A 		1
(1.5)
A 		0.7
(-3)
A 		0
B 0.8
(-1.5)
A 		0.9
(0)
A 		1
(1.5)
A 		1.1
(3)
A 		1
(1.5)
A 		0.7
(-3)
A 		0
C 1
(-1.8)
A 		0.9
(-2.4)
A 		1.5
(1.2)
A 		0.8
(-3)
A 		1
(-1.8)
A 		1.8
(3)
A 		1
avr 0.8
(-3) 		1
(1) 		1.1
(3) 		0.9
(-1) 		1
(1) 		1.1
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19146
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.H NCBI
Target Description Y67D8C.H /REP_DB=WormBase Gene ID /WP=CE22787 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23376.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y67D8C.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y67D8C.H Y67D8C.H /REP_DB=WormBase Gene ID /WP=CE22787 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23376.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067883 11/11 Negative Strand Matching Probes A 
SNAP00000001608 11/11 Negative Strand Matching Probes None
GENEFINDER00000001628 11/11 Negative Strand Matching Probes None
Y67D8C.5 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3038679-3040985(+) 79.05 100.0
Sequence
Target Sequence 
>C. ELEGANS:176931_AT
gaagcattcggtgcaaccgactctgaaacggtattcgtcgtattcgttgcagccggagtt
gcaagcccaatctcttcaggagccggagccggagcatctgggctcgctggagaatcactt
tgctcagcagatggagctggagcagaaaatcaaaatcgtctctgaacaaatcggcgaacg
acgtgacagctgggcgtccaaacgacggcgggaaaatcatatcatccatacgctgagcat
caaacggtcctcccatatcaaagtaatcatcgtccaaatccaatcgttgaacatcatcct
ccatactatcaccatcctcatctccatcgtcatcctcctcatcatcgtcgtcctcttcga
aaagtcgccgagccaatggctctggattctgctcaacatgtcgaacatcatcctcatcct
gatcatcatcttctgcctcttcctcctcatcctcatcatcatcatcgtcttcatcatctt
catcctcccgatcatgatcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCATTCGGTGCAACCGACTCTG 25 341 168 Antisense
TCGTATTCGTTGCAGCCGGAGTTGC 208 249 205 Antisense
GCATCTGGGCTCGCTGGAGAATCAC 273 309 261 Antisense
GAACGACGTGACAGCTGGGCGTCCA 651 347 343 Antisense
CATATCATCCATACGCTGAGCATCA 75 215 385 Antisense
AAGTAATCATCGTCCAAATCCAATC 703 155 428 Antisense
ATCGTTGAACATCATCCTCCATACT 382 35 450 Antisense
TCGTCCTCTTCGAAAAGTCGCCGAG 37 601 515 Antisense
AGCCAATGGCTCTGGATTCTGCTCA 299 85 538 Antisense
AACATGTCGAACATCATCCTCATCC 446 137 562 Antisense
TTCATCCTCCCGATCATGATCATCT 262 687 646 Antisense
Sequence Source Affymetrix Proprietary Database