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[176927_at]

Description Y42H9B.D /REP_DB=WormBase Gene ID /WP=CE25282 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60568.1
Cluster 6grp_total > 19      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 4.8
(-3)
A 		11.1
(-2.4)
A 		46.1
(0.9)
A 		67.6
(3)
A 		63
B 9
(-2.7)
A 		38.5
(3)
A 		7.5
(-3)
A 		11.1
(-2.3)
A 		31
C 10.2
(-2.5)
A 		13.4
(-2.2)
A 		5.1
(-3)
A 		65
(3)
A 		60
avr 8
(-3) 		21
(-1) 		19.6
(-1.3) 		47.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 37.4
(1.5)
A 		24.7
(-0.2)
A 		21.2
(-0.6)
A 		2.9
(-3)
A 		49.3
(3)
A 		4.1
(-2.8)
A 		46
B 18.4
(3)
A 		11.1
(-0.3)
A 		9.3
(-1.2)
A 		16.2
(2)
A 		12.7
(0.4)
A 		5.3
(-3)
A 		13
C 5
(-2)
A 		5.3
(-1.8)
A 		11.2
(3)
A 		5.4
(-1.7)
A 		3.8
(-3)
A 		4.9
(-2.1)
A 		7
avr 20.3
(2.4) 		13.7
(0.1) 		13.9
(0.2) 		8.2
(-1.8) 		21.9
(3) 		4.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.7
(-3)
A 		2.4
(-2.6)
A 		12.1
(3)
A 		9.9
(1.7)
A 		10
B 2.9
(-2.1)
A 		9.5
(3)
A 		1.7
(-3)
A 		2.4
(-2.5)
A 		8
C 3.4
(-2)
A 		3.9
(-1.6)
A 		1.8
(-3)
A 		11
(3)
A 		9
avr 2.7
(-3) 		5.3
(0.1) 		5.2
(-0.1) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.9
(-0.4)
A 		8.8
(0.4)
A 		4.6
(-1.4)
A 		0.7
(-3)
A 		14.9
(3)
A 		1
(-2.9)
A 		14
B 6.4
(3)
A 		3.7
(-0.7)
A 		2.3
(-2.6)
A 		4.3
(0.1)
A 		5.2
(1.4)
A 		2
(-3)
A 		4
C 1.9
(-0.3)
A 		1.6
(-1.3)
A 		2.9
(3)
A 		1.1
(-3)
A 		1.2
(-2.7)
A 		1.6
(-1.3)
A 		2
avr 5.1
(0.9) 		4.7
(0.4) 		3.3
(-1.1) 		2
(-2.5) 		7.1
(3) 		1.5
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19090
Sequence Type Exemplar sequence
Representative Public ID Y42H9B.D NCBI
Target Description Y42H9B.D /REP_DB=WormBase Gene ID /WP=CE25282 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60568.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y42H9B.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y42H9B.D Y42H9B.D /REP_DB=WormBase Gene ID /WP=CE25282 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60568.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8011932-8013047(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176927_AT
tccacttcactgttattttctccaatcacaatactcgctacatcctctgaaatacgcatc
gacggtgccttctgttcgtcaaattcttcgttttttgattttgaacgaaaaggactcaat
ccgttgaaaactgttgtgatagaagatgtacttcccagtgaagagtatccagacgaagag
cttgctaaacttttgctcgccagacttcgtgacgctgcagaagatagtgatgacgtcgca
ctgctatttttctttggatatctgaaatttgatgccgctattgagcaaggggtgtctcag
gtcataaacttaccgatattcgataggaagtctgctgtcaaacatatgtctggtccattt
gctgaaattgtaattgatgaagtgggagaagagagtgagcccaagcacatcctcaacatt
ctccccccgtccacccagtctagctccaccctcactatctacgagccatcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTTCACTGTTATTTTCTCCAA 57 589 25 Antisense
TTTTCTCCAATCACAATACTCGCTA 391 677 40 Antisense
CTCGCTACATCCTCTGAAATACGCA 457 233 58 Antisense
TGAAATACGCATCGACGGTGCCTTC 702 571 72 Antisense
GAGTATCCAGACGAAGAGCTTGCTA 136 399 187 Antisense
CCAGACTTCGTGACGCTGCAGAAGA 627 271 224 Antisense
GTCGCACTGCTATTTTTCTTTGGAT 297 475 259 Antisense
GGGGTGTCTCAGGTCATAAACTTAC 192 497 313 Antisense
GCTGTCAAACATATGTCTGGTCCAT 599 295 358 Antisense
AAGAGAGTGAGCCCAAGCACATCCT 75 155 413 Antisense
CCTCACTATCTACGAGCCATCGAAA 83 269 474 Antisense
Sequence Source Affymetrix Proprietary Database