[Home] | [Total List]

[176926_at]

Description Y34D9A.M /REP_DB=WormBase Gene ID /WP=CE21537 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59443.1
Cluster 6grp_total > 90      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 41.1
(-1.9)
A 		58.9
(3)
A 		50
(0.5)
A 		37.3
(-3)
A 		22
B 30.2
(-3)
A 		81.5
(3)
A 		39.6
(-1.9)
A 		75.9
(2.3)
A 		51
C 51.4
(-0.9)
A 		83.9
(3)
A 		41.4
(-2.2)
A 		34.5
(-3)
A 		49
avr 40.9
(-3) 		74.8
(3) 		43.7
(-2.5) 		49.2
(-1.5) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 62.9
(2.9)
A 		9.5
(-2.4)
A 		3.4
(-3)
A 		63.9
(3)
A 		41.8
(0.8)
A 		3
(-3)
A 		61
B 8.2
(-2.9)
A 		15.2
(-1.6)
A 		7.5
(-3)
A 		39.8
(3)
A 		36
(2.3)
A 		25.1
(0.3)
A 		32
C 33.2
(0.2)
A 		16.5
(-3)
A 		30
(-0.4)
A 		40.8
(1.7)
A 		42.8
(2.1)
A 		47.4
(3)
A 		31
avr 34.8
(0.7) 		13.7
(-3) 		13.6
(-3) 		48.2
(3) 		40.2
(1.6) 		25.2
(-1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15
(3)
A 		12.8
(1.6)
A 		13.1
(1.8)
A 		5.5
(-3)
A 		10
B 9.6
(-2.8)
A 		20.1
(3)
A 		9.2
(-3)
A 		16.2
(0.9)
A 		11
C 17
(0.7)
A 		24.1
(3)
A 		14.4
(-0.2)
A 		5.8
(-3)
A 		18
avr 13.9
(-0.1) 		19
(3) 		12.2
(-1.2) 		9.2
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.6
(1.2)
A 		3.4
(-2)
A 		0.7
(-3)
A 		16.2
(3)
A 		12.6
(1.6)
A 		0.7
(-3)
A 		16
B 2.9
(-2.5)
A 		5.1
(-1.5)
A 		1.8
(-3)
A 		10.5
(1.1)
A 		14.6
(3)
A 		9.4
(0.6)
A 		13
C 12.3
(1)
A 		5
(-3)
A 		7.6
(-1.6)
A 		8.2
(-1.2)
A 		13.9
(1.9)
A 		15.9
(3)
A 		11
avr 8.9
(0.2) 		4.5
(-2.4) 		3.4
(-3) 		11.6
(1.8) 		13.7
(3) 		8.7
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18628
Sequence Type Exemplar sequence
Representative Public ID Y34D9A.M NCBI
Target Description Y34D9A.M /REP_DB=WormBase Gene ID /WP=CE21537 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59443.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058414 NCBI Caenorhabditis elegans Y34D9A.2 (Y34D9A.2) mRNA, complete cds. 11/11 None
SNAP00000009172 ENSEMBL cdna:SNAP chromosome:CEL140:I:1062449:1064920:1 11/11 None
GENEFINDER00000009196 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1062449:1064920:1 11/11 None
Y34D9A.2 ENSEMBL cdna:known chromosome:CEL140:I:1062295:1065271:1 gene:Y34D9A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1062448-1064920(+) 95.08 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34D9A.2
Entrez Gene 189587 Entrez gene
SwissProt Q9N452 EMBL-EBI
WormBase CE30217 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490815 Y34D9A.2 [Caenorhabditis elegans] gb|AAK29882.2| Hypothetical protein Y34D9A.2 [Caenorhabditis elegans] 1.0E-158
blast NP_490815 Y34D9A.2 [Caenorhabditis elegans] gb|AAK29882.2| Hypothetical protein Y34D9A.2 [Caenorhabditis elegans] 1.0E-154
blast CAE74359 Hypothetical protein CBG22082 [Caenorhabditis briggsae] 1.0E-141
blast CAE74359 Hypothetical protein CBG22082 [Caenorhabditis briggsae] 1.0E-137
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490815.2 7 28-50,63-85,105-127,147-169,189-211,231-250,265-287
Y34D9A.2 7 28-50,63-85,105-127,147-169,189-211,231-250,265-287
SNAP00000009172 7 28-50,63-85,105-127,147-169,189-211,231-250,265-287
GENEFINDER00000009196 7 28-50,63-85,129-151,172-194,214-236,256-275,290-312
Sequence
Target Sequence 
>C. ELEGANS:176926_AT
ccactacgagcaacttttcggcctgacacccaccaaactatgcatcttgtcgtggataat
ctcctggctcctctctctaccgtctctaaccaacggccacgtggcgatctacggcccagc
ggtccgaacttgcgtcttctcacactcggactctggcctaaaattcttgacgtacaccat
gatcttcggcgtgttcattccggccttattctcgtcgatcgcctactttcgaattctaca
gactctatttcatagtccaattgtgttccagtcgctgggcttgtacaagagcagattcct
cgtgtatttcttccttttgggtcccctctacgctctgcccttctacatcctaaccgcctt
ggacccgtcggatcccgtccgaatgagtcaggacacactgtggaccatcggatgcaccat
gttcgccttcgtaccgtgcatcatcgctccgttgctctacggagccagcattttcatcat
aaaggaggaggatatggctctgacggcgaggactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTACGAGCAACTTTTCGGCCTG 1 275 483 Antisense
ACACCCACCAAACTATGCATCTTGT 74 111 508 Antisense
TTGTCGTGGATAATCTCCTGGCTCC 659 707 529 Antisense
TAACCAACGGCCACGTGGCGATCTA 628 627 569 Antisense
CACACTCGGACTCTGGCCTAAAATT 507 193 623 Antisense
TTGACGTACACCATGATCTTCGGCG 644 703 649 Antisense
ATAGTCCAATTGTGTTCCAGTCGCT 266 19 734 Antisense
TCCTCGTGTATTTCTTCCTTTTGGG 577 591 779 Antisense
GGACACACTGTGGACCATCGGATGC 673 525 873 Antisense
GCTCTACGGAGCCAGCATTTTCATC 241 301 936 Antisense
GATATGGCTCTGACGGCGAGGACTC 604 425 973 Antisense
Sequence Source Affymetrix Proprietary Database