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[176921_at]

Description Y34D9A.F /REP_DB=WormBase Gene ID /WP=CE25236 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59436.1
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 52      6grp_total > 11      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 1043.5
(3)
P 		862.2
(1.6)
P 		743.6
(0.8)
P 		242.1
(-3)
P 		801
B 645.4
(2.6)
P 		602
(2.1)
P 		683.6
(3)
P 		155.7
(-3)
P 		528
C 513
(0.6)
P 		572.2
(1.4)
P 		697.7
(3)
P 		235.7
(-3)
P 		462
avr 734
(3) 		678.8
(2.4) 		708.3
(2.7) 		211.2
(-3) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 696
1 2 3 4 5 6 range
A 412.8
(-3)
P 		857.5
(3)
P 		644.4
(0.1)
P 		670.3
(0.5)
P 		563.5
(-1)
P 		517.5
(-1.6)
P 		445
B 822.6
(3)
P 		449.9
(-2.8)
P 		574.8
(-0.8)
P 		436.3
(-3)
P 		603.5
(-0.4)
P 		635.8
(0.1)
P 		386
C 702.4
(0)
P 		1049.3
(3)
P 		776.8
(0.7)
P 		456.2
(-2.1)
P 		519.4
(-1.6)
P 		353.2
(-3)
P 		696
avr 645.9
(0) 		785.6
(3) 		665.3
(0.5) 		520.9
(-2.6) 		562.1
(-1.7) 		502.2
(-3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 379.9
(3)
P 		187.2
(-0.4)
P 		194.4
(-0.2)
P 		35.4
(-3)
P 		345
B 205.8
(3)
P 		148.7
(1)
P 		158.4
(1.4)
P 		33.2
(-3)
P 		173
C 169.8
(0.8)
P 		164.5
(0.7)
P 		243.2
(3)
P 		39.7
(-3)
P 		204
avr 251.8
(3) 		166.8
(0.6) 		198.7
(1.5) 		36.1
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 76.1
(-3)
P 		305
(3)
P 		140.3
(-1.3)
P 		170
(-0.5)
P 		170
(-0.5)
P 		126
(-1.7)
P 		229
B 286.2
(3)
P 		149.7
(-1.8)
P 		139.6
(-2.2)
P 		115.6
(-3)
P 		245.2
(1.6)
P 		237.1
(1.3)
P 		171
C 260.3
(1.4)
P 		320.2
(3)
P 		197.7
(-0.2)
P 		91.7
(-3)
P 		168.1
(-1)
P 		118.2
(-2.3)
P 		229
avr 207.5
(0.7) 		258.3
(3) 		159.2
(-1.5) 		125.8
(-3) 		194.4
(0.1) 		160.4
(-1.4) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18624
Sequence Type Exemplar sequence
Representative Public ID Y34D9A.F NCBI
Target Description Y34D9A.F /REP_DB=WormBase Gene ID /WP=CE25236 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59436.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058407
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009164 ENSEMBL cdna:SNAP chromosome:CEL140:I:1019921:1052164:-1 None
GENEFINDER00000009203 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1028698:1029910:-1 None
NM_058407 NCBI Caenorhabditis elegans Y34D9A.1 (Y34D9A.1) mRNA, complete cds. A 
Y34D9A.1 ENSEMBL cdna:known chromosome:CEL140:I:1019886:1029912:-1 gene:Y34D9A.1 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009200 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009202 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1019916-1029910(-) 83.89 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34D9A.1
Entrez Gene 171682 Entrez gene
SwissProt Q9BL86 EMBL-EBI
WormBase CE27249 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584188_AT similar to mitochondrial ribosomal protein L38 cfa
CANINE_2:CFA.14861.1.A1_S_AT similar to mitochondrial ribosomal protein L38 cfa
CANINE_2:CFA.18802.1.S1_S_AT similar to mitochondrial ribosomal protein L38 cfa
CANINE_2:CFAAFFX.8360.1.S1_AT similar to mitochondrial ribosomal protein L38 cfa
DROSOPHILA_2:1638073_AT mitochondrial ribosomal protein L38 dm
DROSGENOME1:145056_AT mitochondrial ribosomal protein L38 dm
HU35KSUBA:RC_AA456612_AT mitochondrial ribosomal protein L38 hs
HU35KSUBD:RC_AA620552_R_AT mitochondrial ribosomal protein L38 hs
U133_X3P:HS2.436579.1.S1_3P_AT mitochondrial ribosomal protein L38 hs
U133_X3P:HS2.380465.1.S2_3P_S_AT mitochondrial ribosomal protein L38 hs
U133_X3P:HS.25682.0.S1_3P_AT mitochondrial ribosomal protein L38 hs
HG-U133_PLUS_2:1561508_AT mitochondrial ribosomal protein L38 hs
HG-U133_PLUS_2:225103_AT mitochondrial ribosomal protein L38 hs
HG-U133B:225103_AT mitochondrial ribosomal protein L38 hs
HG-U95C:65833_AT mitochondrial ribosomal protein L38 hs
HG-U95C:65834_AT mitochondrial ribosomal protein L38 hs
HG-U95D:71188_AT mitochondrial ribosomal protein L38 hs
HG-U133_PLUS_2:230726_AT Mitochondrial ribosomal protein L38 hs
HG-U133B:230726_AT Mitochondrial ribosomal protein L38 hs
U133_X3P:HS.25682.1.A1_3P_AT Mitochondrial ribosomal protein L38 hs
MOUSE430A_2:1447961_S_AT mitochondrial ribosomal protein L38 mm
MOE430A:1447961_S_AT mitochondrial ribosomal protein L38 mm
MOUSE430_2:1447961_S_AT mitochondrial ribosomal protein L38 mm
MG-U74AV2:96335_AT mitochondrial ribosomal protein L38 mm
MG-U74CV2:170959_R_AT mitochondrial ribosomal protein L38 mm
MOE430A:1430610_AT mitochondrial ribosomal protein L38 mm
MOUSE430A_2:1430610_AT mitochondrial ribosomal protein L38 mm
MOUSE430_2:1430610_AT mitochondrial ribosomal protein L38 mm
MOE430B:1444217_AT mitochondrial ribosomal protein L38 mm
MOUSE430_2:1444217_AT mitochondrial ribosomal protein L38 mm
MU19KSUBB:TC34547_AT Mitochondrial ribosomal protein L38, mRNA (cDNA clone MGC:41062 IMAGE:1493919) mm
RG-U34A:RC_AA891689_G_AT mitochondrial ribosomal protein L38 (predicted) rn
RG-U34A:RC_AA891689_AT mitochondrial ribosomal protein L38 (predicted) rn
RAE230A:1383618_AT mitochondrial ribosomal protein L38 (predicted) rn
RAT230_2:1383618_AT mitochondrial ribosomal protein L38 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_490808 Y34D9A.1 [Caenorhabditis elegans] gb|AAK29884.1| Hypothetical protein Y34D9A.1 [Caenorhabditis elegans] 0.0
blast CAE74320 Hypothetical protein CBG22031 [Caenorhabditis briggsae] 0.0
blast AAV68307 SPD-1 [Caenorhabditis elegans] ref|NP_490809.2| SPindle Defective family member (spd-1) [Caenorhabditis elegans] gb|AAT81176.1| Spindle defective protein 1 [Caenorhabditis elegans] 0.0
blast NP_490808 Y34D9A.1 [Caenorhabditis elegans] gb|AAK29884.1| Hypothetical protein Y34D9A.1 [Caenorhabditis elegans] 2.0E-64
blast CAE74320 Hypothetical protein CBG22031 [Caenorhabditis briggsae] 2.0E-57
blast EAA06842 ENSANGP00000019033 [Anopheles gambiae str. PEST] ref|XP_311178.2| ENSANGP00000019033 [Anopheles gambiae str. PEST] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR007145 EMBL-EBI MAP65/ASE1 1.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009164 1 67-89
Sequence
Target Sequence 
>C. ELEGANS:176921_AT
tttcttccaaacttcctacgacaatagtgtcaaaatggctcttcacgggctcggaatgac
gtcaccactctacgaatatgagcacagaccggctctgaagccggctcaacgagaatttcc
cgaaaaaccgcagccattcgatttgtatttggatatgtatcgagatccgaaagaagtcga
gcaagagatgcttgaaaaaagattggcagaagtgaaattggattatgttaaggtggtaga
aattgacctgtggaaaattgaaaattcggaaaaaaaaaatttttcaccaatttttgacat
aaaatcgcgtaaaaatgacctaaaactcggaaaattgcgagattttccaagaaaatattt
aaaaaactattttttctgcaaaatcgaacatgctctggaaatttgctggaaaacgatttt
tctacgaaatttcgagaaaaaattcgccgccggaaaacattttaaaatagaaaattttgt
tgttttacgcattttttcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTCCAAACTTCCTACGACAAT 199 671 1113 Antisense
CCAAACTTCCTACGACAATAGTGTC 416 275 1119 Antisense
TGTCAAAATGGCTCTTCACGGGCTC 214 557 1140 Antisense
GCTCTTCACGGGCTCGGAATGACGT 341 299 1150 Antisense
TCGGAATGACGTCACCACTCTACGA 659 605 1163 Antisense
GTCACCACTCTACGAATATGAGCAC 619 465 1173 Antisense
ATATGAGCACAGACCGGCTCTGAAG 496 21 1188 Antisense
GGTGGTAGAAATTGACCTGTGGAAA 222 499 1344 Antisense
ATGACCTAAAACTCGGAAAATTGCG 25 1 1427 Antisense
TCTGCAAAATCGAACATGCTCTGGA 547 607 1487 Antisense
TGTTGTTTTACGCATTTTTTCAGAA 488 561 1590 Antisense
Sequence Source Affymetrix Proprietary Database