[Home] | [Total List]

[176920_at]

Description Y67D8C.D /REP_DB=WormBase Gene ID /WP=CE22782 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23372.1
Cluster 4grp_high_8_8 > 31      6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 120.7
(-3)
A 		135.1
(-1.3)
P 		147.3
(0.2)
M 		170.2
(3)
P 		50
B 118.6
(-3)
P 		146.3
(3)
A 		139.7
(1.6)
A 		133.7
(0.3)
P 		28
C 147.2
(0.7)
P 		91.7
(-3)
A 		159
(1.5)
P 		181.7
(3)
P 		90
avr 128.8
(-2.3) 		124.4
(-3) 		148.7
(0.9) 		161.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 43.6
(-3)
A 		141
(3)
P 		135.4
(2.7)
A 		95
(0.2)
A 		84.4
(-0.5)
A 		95.9
(0.2)
A 		97
B 100.7
(2.7)
A 		77.6
(-0.7)
P 		61.8
(-3)
A 		101.1
(2.7)
A 		103.1
(3)
P 		64.8
(-2.6)
M 		41
C 93.4
(-1.6)
A 		134.5
(1.5)
P 		155.2
(3)
P 		131.1
(1.2)
A 		74.8
(-3)
A 		79.6
(-2.6)
P 		80
avr 79.2
(-3) 		117.7
(3) 		117.5
(3) 		109.1
(1.7) 		87.4
(-1.7) 		80.1
(-2.9) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 44
(3)
A 		29.3
(-1.6)
P 		38.5
(1.3)
M 		24.9
(-3)
P 		19
B 37.8
(3)
P 		36.1
(1.9)
A 		32.4
(-0.5)
A 		28.5
(-3)
P 		9
C 48.7
(1.6)
P 		26.4
(-3)
A 		55.4
(3)
P 		30.6
(-2.1)
P 		29
avr 43.5
(3) 		30.6
(-2) 		42.1
(2.5) 		28
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8
(-3)
A 		50.1
(3)
P 		29.5
(0.1)
A 		24.1
(-0.7)
A 		25.5
(-0.5)
A 		23.3
(-0.8)
A 		42
B 35
(1.5)
A 		25.8
(-0.6)
P 		15
(-3)
A 		26.8
(-0.4)
A 		41.9
(3)
P 		24.2
(-0.9)
M 		27
C 34.6
(0.7)
A 		41.1
(3)
P 		39.5
(2.4)
P 		26.4
(-2.2)
A 		24.2
(-3)
A 		26.6
(-2.1)
P 		17
avr 25.9
(-2.5) 		39
(3) 		28
(-1.6) 		25.8
(-2.5) 		30.5
(-0.6) 		24.7
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19381
Sequence Type Exemplar sequence
Representative Public ID Y67D8C.D NCBI
Target Description Y67D8C.D /REP_DB=WormBase Gene ID /WP=CE22782 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23372.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067891
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067891 NCBI Caenorhabditis elegans Y67D8C.9 (Y67D8C.9) mRNA, complete cds. None
GENEFINDER00000001629 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3077377:3088565:-1 None
Y67D8C.9 ENSEMBL cdna:known chromosome:CEL140:IV:3077475:3086919:-1 gene:Y67D8C.9 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001617 4/11 Cross Hyb Matching Probes None
SNAP00000001618 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3074901-3086852(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.9
Entrez Gene 177088 Entrez gene
SwissProt Q9GUN3 EMBL-EBI
WormBase CE27507 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4179 membrane alanyl aminopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG23372 Hypothetical protein Y67D8C.9 [Caenorhabditis elegans] ref|NP_500292.1| Y67D8C.9 [Caenorhabditis elegans] 0.0
blast CAE59886 Hypothetical protein CBG03367 [Caenorhabditis briggsae] 0.0
blast EAL26872 GA11295-PA [Drosophila pseudoobscura] 8.0E-55
blast EAL26872 GA11295-PA [Drosophila pseudoobscura] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 3.7E-98
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 3.7E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500292.1 1 46-68
Y67D8C.9 1 46-68
GENEFINDER00000001629 4 77-96,109-131,151-173,247-269
Sequence
Target Sequence 
>C. ELEGANS:176920_AT
aattctaccgatatacttccagcttctcggattttgttgcattctgtcaagactattgat
gaacttcagcagatacgtggtctactcaccaactggggaccacttctctcattacatttc
gaatatctcgaacggtaccttttatgggtttccagtgtgtcacaaggcgtggctatgcct
acgcctacctgcctgaaaaacagcagagtttgtatttttaagaacgaatttttaacaaca
aaaaaatccaaagactgtaaaattttaaaaaattttctcctaattcctactggacaaatt
ctaaatgccattatacccagtatcttcttcactataatcgctggattctccgagtactgg
gctcgcgccgaggttatcgacactagaaaattccaacacgcgggctcagttcacactggc
gtttttgcgggaaaccgagagattgactttggacagggagatgtaaacactcgatttaca
ggtttgtgttcaatgagctacaagaaggcacctcattcttctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTACCGATATACTTCCAGCTT 367 177 3196 Antisense
CCAGCTTCTCGGATTTTGTTGCATT 436 273 3214 Antisense
GCAGATACGTGGTCTACTCACCAAC 336 309 3264 Antisense
CTACGCCTACCTGCCTGAAAAACAG 38 225 3374 Antisense
ATTTTCTCCTAATTCCTACTGGACA 584 13 3467 Antisense
TTATACCCAGTATCTTCTTCACTAT 301 679 3506 Antisense
AATCGCTGGATTCTCCGAGTACTGG 73 169 3531 Antisense
TCGCGCCGAGGTTATCGACACTAGA 454 597 3558 Antisense
TAGAAAATTCCAACACGCGGGCTCA 42 653 3579 Antisense
TCAGTTCACACTGGCGTTTTTGCGG 473 623 3601 Antisense
CAAGAAGGCACCTCATTCTTCTCTC 505 185 3696 Antisense
Sequence Source Affymetrix Proprietary Database