[Home] | [Total List]

[176919_at]

Description Y48G1C.G /REP_DB=WormBase Gene ID /WP=CE22172 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60702.1
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 305
(-1.7)
P 		254.4
(-2.9)
P 		249.8
(-3)
P 		509.4
(3)
P 		260
B 280.2
(-0.8)
P 		271.7
(-1.1)
P 		215.5
(-3)
P 		389.4
(3)
P 		174
C 309.8
(-0.1)
P 		306.2
(-0.3)
P 		213.1
(-3)
P 		416.3
(3)
P 		203
avr 298.3
(-1) 		277.4
(-1.6) 		226.1
(-3) 		438.4
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 256.2
(-2.6)
P 		240.7
(-3)
P 		270.2
(-2.2)
P 		293.7
(-1.6)
P 		371.7
(0.5)
P 		467.1
(3)
P 		226
B 209.6
(-3)
P 		220.4
(-2.7)
P 		343.9
(0.8)
P 		322.7
(0.2)
P 		350.2
(1)
P 		420.8
(3)
P 		211
C 188.1
(-3)
P 		275.1
(-1.1)
P 		296
(-0.7)
P 		325.4
(-0.1)
P 		351.2
(0.5)
P 		469.2
(3)
P 		281
avr 218
(-3) 		245.4
(-2.3) 		303.4
(-0.8) 		313.9
(-0.5) 		357.7
(0.6) 		452.4
(3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 111.1
(3)
P 		55.2
(-3)
P 		65.3
(-1.9)
P 		74.6
(-0.9)
P 		56
B 89.4
(3)
P 		67.1
(-0.4)
P 		49.9
(-3)
P 		83
(2)
P 		40
C 102.5
(3)
P 		88
(0.3)
P 		74.3
(-2.2)
P 		70.2
(-3)
P 		32
avr 101
(3) 		70.1
(-1.9) 		63.2
(-3) 		75.9
(-1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 47.2
(-3)
P 		85.6
(0.5)
P 		58.8
(-2)
P 		74.5
(-0.5)
P 		112.2
(2.9)
P 		113.7
(3)
P 		67
B 72.9
(-3)
P 		73.4
(-3)
P 		83.5
(-2.2)
P 		85.5
(-2.1)
P 		142.3
(2)
P 		156.9
(3)
P 		84
C 69.7
(-2.7)
P 		84
(-1.8)
P 		75.3
(-2.4)
P 		65.4
(-3)
P 		113.6
(0.2)
P 		157.1
(3)
P 		92
avr 63.3
(-3) 		81
(-1.7) 		72.5
(-2.3) 		75.1
(-2.1) 		122.7
(1.5) 		142.6
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18877
Sequence Type Exemplar sequence
Representative Public ID Y48G1C.G NCBI
Target Description Y48G1C.G /REP_DB=WormBase Gene ID /WP=CE22172 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60702.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058271 NCBI Caenorhabditis elegans Y48G1C.1 (Y48G1C.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011493 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:93092:94714:1 11/11 None
SNAP00000011481 ENSEMBL cdna:SNAP chromosome:CEL140:I:93182:94714:1 11/11 None
Y48G1C.1 ENSEMBL cdna:known chromosome:CEL140:I:93092:94834:1 gene:Y48G1C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:93181-94714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.1
Entrez Gene 171599 Entrez gene
SwissProt Q9N3P1 EMBL-EBI
WormBase CE30019 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490672 Y48G1C.1 [Caenorhabditis elegans] gb|AAK29893.2| Hypothetical protein Y48G1C.1 [Caenorhabditis elegans] 0.0
blast CAE60638 Hypothetical protein CBG04282 [Caenorhabditis briggsae] 1.0E-99
Sequence
Target Sequence 
>C. ELEGANS:176919_AT
ttcgacggaagctgctgctgaccgagatgcagattttcgcgccgttgcgaatgtgccata
ttactgtcaaggcggaatttaacttctcgattcccgatggttccccgattcaatggacca
tatcatcgttccagccactcatcgaagaatcagagaaggatccgaatattgggcgcaatt
tatggccagcgagagtgctcagattcgatgatttagtcgttacaaagaagacaccgaacg
gctactggctgaagtctcaaagattggagggtcacgttaatgtgttcgccggtgcaaatc
aaatcggaatcattgagtcggcgggtgaaaaatacgcgacgaagggaagcatgatggcgt
tcgtggttccgtgctatcagaacagcacgtttgcatatttcgaagcacttatcgccggac
ccccgcgagtcgtgatgattattaccgaaggacgctttctgaattattgcccgaagacgt
ggccaccgtctgttcggaaaatgcgtgatcagtatcagaaagagcacgttctgaaatccg
aagtccgaagttcaccaatctgcatgaaacagccggattattgcctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGACGGAAGCTGCTGCTGACCGA 645 687 710 Antisense
GACCGAGATGCAGATTTTCGCGCCG 660 381 729 Antisense
TAACTTCTCGATTCCCGATGGTTCC 119 639 789 Antisense
GATGGTTCCCCGATTCAATGGACCA 318 405 805 Antisense
ACACCGAACGGCTACTGGCTGAAGT 484 109 940 Antisense
GGGTCACGTTAATGTGTTCGCCGGT 337 495 978 Antisense
AAGCATGATGGCGTTCGTGGTTCCG 269 151 1056 Antisense
ATTTCGAAGCACTTATCGCCGGACC 185 17 1106 Antisense
GGACGCTTTCTGAATTATTGCCCGA 381 523 1159 Antisense
GAAGTCCGAAGTTCACCAATCTGCA 696 335 1249 Antisense
GAAACAGCCGGATTATTGCCTCAAA 672 355 1275 Antisense
Sequence Source Affymetrix Proprietary Database