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[176918_at]

Description M7.8 /REP_DB=WormBase Gene ID /WP=CE03488 /TR=Q21589 /GB=CAA92743.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 32      4grp_total > 11      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 146.9
(-0.1)
M 		162.8
(1)
P 		104.7
(-3)
P 		191.6
(3)
P 		87
B 133.9
(-2.2)
P 		143
(-1.8)
P 		115.8
(-3)
P 		255.7
(3)
P 		140
C 144.2
(-2.3)
P 		137.3
(-3)
P 		170.7
(0.2)
P 		200.4
(3)
P 		63
avr 141.7
(-2.2) 		147.7
(-1.8) 		130.4
(-3) 		215.9
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 176
(0.1)
P 		179.5
(0.3)
P 		220.7
(3)
P 		205.6
(2)
P 		129.4
(-3)
P 		135.8
(-2.6)
P 		91
B 199.3
(0.7)
P 		180.4
(-0.1)
P 		250.5
(3)
P 		180.7
(-0.1)
P 		178.7
(-0.2)
P 		114.1
(-3)
P 		136
C 206.9
(1.8)
P 		220.6
(3)
P 		157.1
(-2.7)
P 		180.7
(-0.6)
P 		153.2
(-3)
P 		176.6
(-0.9)
P 		67
avr 194.1
(1.6) 		193.5
(1.6) 		209.4
(3) 		189
(1.2) 		153.8
(-2) 		142.2
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 53.5
(3)
M 		35.4
(-1.2)
P 		27.4
(-3)
P 		28.1
(-2.8)
P 		26
B 42.7
(0.4)
P 		35.3
(-1.2)
P 		26.8
(-3)
P 		54.5
(3)
P 		28
C 47.7
(0.2)
P 		39.5
(-1.7)
P 		59.5
(3)
P 		33.8
(-3)
P 		26
avr 48
(3) 		36.7
(-3) 		37.9
(-2.4) 		38.8
(-1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 32.5
(-3)
P 		63.9
(3)
P 		48.1
(-0)
P 		52.1
(0.7)
P 		39
(-1.8)
P 		33.1
(-2.9)
P 		31
B 69.4
(2.4)
P 		60
(0.5)
P 		60.8
(0.6)
P 		47.9
(-1.9)
P 		72.6
(3)
P 		42.5
(-3)
P 		30
C 76.7
(3)
P 		67.3
(1.6)
P 		40
(-2.5)
P 		36.3
(-3)
P 		49.6
(-1)
P 		59.1
(0.4)
P 		40
avr 59.5
(1.7) 		63.7
(3) 		49.6
(-1.5) 		45.4
(-2.8) 		53.7
(-0.2) 		44.9
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10282
Sequence Type Exemplar sequence
Representative Public ID M7.8 NCBI
Target Description M7.8 /REP_DB=WormBase Gene ID /WP=CE03488 /TR=Q21589 /GB=CAA92743.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069668 NCBI Caenorhabditis elegans M7.8 (M7.8) mRNA, complete cds. 11/11 None
SNAP00000010385 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11093935:11094975:-1 11/11 None
GENEFINDER00000010394 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11093935:11094975:-1 11/11 None
M7.8 ENSEMBL cdna:known chromosome:CEL140:IV:11093935:11094975:-1 gene:M7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11093940-11094981(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M7.8
Entrez Gene 187457 Entrez gene
SwissProt Q21589 EMBL-EBI
WormBase CE03488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92743 Hypothetical protein M7.8 [Caenorhabditis elegans] ref|NP_502069.1| M7.8 [Caenorhabditis elegans] 1.0E-129
blast CAE61997 Hypothetical protein CBG06005 [Caenorhabditis briggsae] 1.0E-105
blast CAA92749 Hypothetical protein M7.12 [Caenorhabditis elegans] ref|NP_502070.2| M7.12 [Caenorhabditis elegans] 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:176918_AT
atgaaccgcttaatagggcatctaaaatatcctgtgaagaaattgaaaaatgtctggatg
gagcacttgacagagctctcaaaacagaatcgtcaattctcgcgaggtcccaagacactc
atgaaattgtcggatgtatgctgaattccgtatggagacgtgatgaatctttgtgcacac
cgggagaagaagacaaggattttgaatttcatacaattagaaaagaagttgcaatggttg
ctgagatattaaatgaacttcatgaaagtttctggagtttgagaccagatcaggatgtgg
ttttgcattttgaaatttcgtcagtcagtgtgaatcacagacgccaaggattagcatcaa
aattcatgaattggactgaaaataaaaaatttttggatacatttggagcaactggcattg
caactgaagcttcatctcttgctaaccaagcacttttggctaaacgtggatattcaacaa
tagctactactttgttggatacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACCGCTTAATAGGGCATCTAA 699 43 119 Antisense
GATGGAGCACTTGACAGAGCTCTCA 411 407 175 Antisense
AGAATCGTCAATTCTCGCGAGGTCC 342 73 204 Antisense
GCGAGGTCCCAAGACACTCATGAAA 275 291 220 Antisense
ATGTATGCTGAATTCCGTATGGAGA 59 49 252 Antisense
GATGAATCTTTGTGCACACCGGGAG 337 411 280 Antisense
ATTTCGTCAGTCAGTGTGAATCACA 392 17 433 Antisense
TCACAGACGCCAAGGATTAGCATCA 407 625 453 Antisense
AACTGGCATTGCAACTGAAGCTTCA 316 143 528 Antisense
TGAAGCTTCATCTCTTGCTAACCAA 175 575 543 Antisense
ATAGCTACTACTTTGTTGGATACCA 342 21 598 Antisense
Sequence Source Affymetrix Proprietary Database