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[176916_at]

Description Y67H2B.C /REP_DB=WormBase Gene ID /WP=CE22792 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60967.1
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_high_8_8 > 62      6grp_highest_nonorm > 91      6grp_total > 67      4grp_total > 59      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 93.2
(1.5)
P 		111.8
(3)
M 		106
(2.5)
A 		39.5
(-3)
A 		72
B 65.7
(-3)
P 		87.5
(1.8)
P 		92.8
(3)
A 		70.7
(-1.9)
P 		27
C 84.9
(0.7)
P 		88.2
(1.4)
P 		96.7
(3)
P 		65.3
(-3)
P 		31
avr 81.3
(0.4) 		95.8
(2.6) 		98.5
(3) 		58.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 118.4
(-2.3)
P 		104.9
(-2.6)
P 		125.2
(-2.2)
P 		188.6
(-1)
P 		82.3
(-3)
P 		400.6
(3)
P 		318
B 83.2
(-2.6)
P 		55.6
(-3)
P 		188.1
(-0.9)
P 		96.9
(-2.3)
P 		87.9
(-2.5)
P 		433.7
(3)
P 		378
C 73.6
(-3)
P 		135.6
(-2.2)
P 		133.7
(-2.2)
P 		115.3
(-2.4)
P 		83.9
(-2.9)
P 		522.9
(3)
P 		449
avr 91.7
(-2.9) 		98.7
(-2.8) 		149
(-2) 		133.6
(-2.2) 		84.7
(-3) 		452.4
(3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 33.9
(3)
P 		24.3
(1)
M 		27.7
(1.7)
A 		5.8
(-3)
A 		28
B 20.9
(2.4)
P 		21.6
(3)
P 		21.5
(2.9)
A 		15.1
(-3)
P 		7
C 28.1
(1.5)
P 		25.3
(0.8)
P 		33.7
(3)
P 		11
(-3)
P 		23
avr 27.6
(3) 		23.7
(1.6) 		27.6
(3) 		10.6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 21.8
(-3)
P 		37.3
(-1.8)
P 		27.3
(-2.6)
P 		47.8
(-0.9)
P 		24.8
(-2.8)
P 		97.5
(3)
P 		76
B 29
(-2.6)
P 		18.5
(-3)
P 		45.7
(-1.9)
P 		25.7
(-2.7)
P 		35.7
(-2.3)
P 		161.7
(3)
P 		143
C 27.3
(-2.8)
P 		41.4
(-2.3)
P 		34
(-2.6)
P 		23.2
(-3)
P 		27.1
(-2.8)
P 		175.1
(3)
P 		152
avr 26
(-3) 		32.4
(-2.7) 		35.7
(-2.5) 		32.2
(-2.7) 		29.2
(-2.8) 		144.8
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19096
Sequence Type Exemplar sequence
Representative Public ID Y67H2B.C NCBI
Target Description Y67H2B.C /REP_DB=WormBase Gene ID /WP=CE22792 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60967.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010790 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13321199:13321798:1 11/11 None
GENEFINDER00000010798 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13321199:13321798:1 11/11 None
Y67H2A.9 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13318868:13321798:1 gene:Y67H2A.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13321204-13321804(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y67H2A.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03908 Hypothetical protein C24H11.2 [Caenorhabditis elegans] ref|NP_499528.1| C24H11.2 [Caenorhabditis elegans] 2.0E-75
blast CAB03912 Hypothetical protein C24H11.1 [Caenorhabditis elegans] ref|NP_499527.1| C24H11.1 [Caenorhabditis elegans] 2.0E-75
blast CAE63740 Hypothetical protein CBG08269 [Caenorhabditis briggsae] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0013
Sequence
Target Sequence 
>C. ELEGANS:176916_AT
gcatgggggaatttctcaacatttgaagtctctcgatgacattcgtgcaatcccattgcc
actaaaaactgcaaagtctcatcctctcgcttgtgacttgttgtgggctgacccggagaa
agctgcaaatgactttgagccaaacaagatccgtgcaatctcgcacatctttggaaaaaa
ggaggttgatgatttgtgcatgagattggatatcgatttgattgttagagcccatcaggt
agtcgagtacggctacgcattcttcgccgatcgtcgactcatcaccgtcttctcggcatc
tcgttatcaaattgagctctgcaattatgcagctgttgtggtggtcaacaagatgtttga
actgagctttgttcagctcaaacccgaagatttcgaagttcgacgtaatgagtgtgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGGGGGAATTTCTCAACATTTG 265 309 15 Antisense
AAAAACTGCAAAGTCTCATCCTCTC 632 129 78 Antisense
TGTGGGCTGACCCGGAGAAAGCTGC 588 553 116 Antisense
GAAAGCTGCAAATGACTTTGAGCCA 473 359 132 Antisense
ATCCGTGCAATCTCGCACATCTTTG 320 39 163 Antisense
GCAATCTCGCACATCTTTGGAAAAA 170 323 169 Antisense
TATCGATTTGATTGTTAGAGCCCAT 69 659 225 Antisense
GTTAGAGCCCATCAGGTAGTCGAGT 385 447 238 Antisense
GTAGTCGAGTACGGCTACGCATTCT 240 455 253 Antisense
GTTTGAACTGAGCTTTGTTCAGCTC 251 451 369 Antisense
GAAGTTCGACGTAATGAGTGTGATG 416 337 409 Antisense
Sequence Source Affymetrix Proprietary Database