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[176914_s_at]

Description F29B9.2 /REP_DB=WormBase Gene ID /WP=CE09781 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99921.1
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_highest_nonorm > 84      6grp_total > 48      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 678.1
(2.5)
P 		457.4
(-2.1)
P 		415.2
(-3)
P 		701.1
(3)
P 		286
B 676.2
(3)
P 		539.2
(0.4)
P 		359.2
(-3)
P 		673.5
(2.9)
P 		317
C 624.5
(1.1)
P 		428.8
(-2.2)
P 		379.3
(-3)
P 		738.8
(3)
P 		360
avr 659.6
(2.2) 		475.1
(-1.3) 		384.6
(-3) 		704.5
(3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 602.6
(0.2)
P 		562.1
(-0.8)
P 		468.3
(-3)
P 		469.3
(-3)
P 		543.3
(-1.2)
P 		722.6
(3)
P 		254
B 711
(2.6)
P 		564.1
(-0)
P 		395.4
(-3)
P 		477.8
(-1.5)
P 		506.1
(-1)
P 		733.5
(3)
P 		338
C 541.5
(0.1)
P 		540.4
(0.1)
P 		541
(0.1)
P 		448.4
(-3)
P 		479.1
(-2)
P 		626
(3)
P 		178
avr 618.4
(1) 		555.5
(-0.6) 		468.2
(-2.9) 		465.2
(-3) 		509.5
(-1.8) 		694
(3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 246.9
(3)
P 		99.3
(-3)
P 		108.5
(-2.6)
P 		102.6
(-2.9)
P 		148
B 215.6
(3)
P 		133.2
(-0.7)
P 		83.2
(-3)
P 		143.5
(-0.3)
P 		132
C 206.7
(3)
P 		123.3
(-3)
P 		132.2
(-2.4)
P 		124.6
(-2.9)
P 		83
avr 223.1
(3) 		118.6
(-2.4) 		108
(-3) 		123.6
(-2.2) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 111.1
(-2.4)
P 		199.9
(3)
P 		102
(-3)
P 		119
(-2)
P 		163.9
(0.8)
P 		175.9
(1.5)
P 		98
B 247.4
(2.1)
P 		187.8
(0.1)
P 		96
(-3)
P 		126.5
(-2)
P 		205.6
(0.7)
P 		273.5
(3)
P 		178
C 200.7
(2.6)
P 		164.9
(0.8)
P 		137.7
(-0.6)
P 		90.2
(-3)
P 		155
(0.3)
P 		209.6
(3)
P 		119
avr 186.4
(1.1) 		184.2
(1) 		111.9
(-3) 		111.9
(-3) 		174.8
(0.5) 		219.7
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11056
Sequence Type Exemplar sequence
Representative Public ID F29B9.2 NCBI
Target Description F29B9.2 /REP_DB=WormBase Gene ID /WP=CE09781 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99921.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068210(11), NM_068209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068210 NCBI Caenorhabditis elegans F29B9.2b (F29B9.2) mRNA, complete cds. 11/11 None
NM_068209 NCBI Caenorhabditis elegans F29B9.2a (F29B9.2) mRNA, complete cds. 11/11 None
SNAP00000034769 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4661000:4664932:1 11/11 None
GENEFINDER00000034778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4661000:4664932:1 11/11 None
F29B9.2a ENSEMBL cdna:known chromosome:CEL140:IV:4660984:4665186:1 gene:F29B9.2 11/11 None
F29B9.2b ENSEMBL cdna:known chromosome:CEL140:IV:4660996:4664932:1 gene:F29B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4661005-4664938(+) 100.0 100.0
Public Domain and Genome References
Ensembl F29B9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500611 F29B9.2b [Caenorhabditis elegans] gb|AAK29800.1| Hypothetical protein F29B9.2b [Caenorhabditis elegans] 0.0
blast NP_500610 F29B9.2a [Caenorhabditis elegans] gb|AAK29799.1| Hypothetical protein F29B9.2a [Caenorhabditis elegans] 0.0
blast CAA90395 Hypothetical protein F43G6.6 [Caenorhabditis elegans] ref|NP_496520.1| F43G6.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 5.7E-14
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 5.7E-14
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 5.7E-14
Sequence
Target Sequence 
>C. ELEGANS:176914_S_AT
tgatgaggactattgcccgtccagctcgactgcctacaagaagaagtatacgaaaaaggc
taagaaggacaatgatgatgctccgaaggtgaagaaggcgaagaaagaggaagttcccga
ggagaaggttccggttcctgaagcagcaggtccttccgaagttacagctccattgaccat
caagattggaatgggaccgactgaagatcagaagggcgttgtccagatattcaataatca
atgcacgtcgtctggaagaaaagtaaagttgaatcagaacgtggccgactattgtggatc
ccatctcgaagcacgcgtcgaagagattccggaaaaggcgacgaaaagcttccgcgagct
tgacaacgaactggagcgctgtgaagctgttcattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGAGGACTATTGCCCGTCCAGC 556 565 2220 Antisense
CCAGCTCGACTGCCTACAAGAAGAA 382 273 2240 Antisense
GCAGGTCCTTCCGAAGTTACAGCTC 469 309 2365 Antisense
GTTACAGCTCCATTGACCATCAAGA 626 445 2380 Antisense
CAATAATCAATGCACGTCGTCTGGA 374 181 2451 Antisense
GAACGTGGCCGACTATTGTGGATCC 133 349 2496 Antisense
TATTGTGGATCCCATCTCGAAGCAC 431 663 2509 Antisense
GAAGCACGCGTCGAAGAGATTCCGG 476 341 2527 Antisense
AAGGCGACGAAAAGCTTCCGCGAGC 437 161 2554 Antisense
CTTCCGCGAGCTTGACAACGAACTG 13 217 2568 Antisense
GGAGCGCTGTGAAGCTGTTCATTCC 310 521 2592 Antisense
Sequence Source Affymetrix Proprietary Database